Status
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Gene information
General information
TC032160
Former TC numbers

If one gene is splitted or genes are merged, the original TC numbers are listed. One listed former TC number indicates the previous gene has be splitted, serveral former TC number represents a merged gene.

TC000503 		Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007417.3: 10529329..10533408
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC032160
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
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    Email
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_02657

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 50.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection

    adult nutritional state bad (cachectic) - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection

    Fertility
    ovary size decreased - Number of animals showing the phenotype: 2

    previtellogenic egg chamber not present - Number of animals showing the phenotype: 2

    vitellogenic egg chamber number decreased - Number of animals showing the phenotype: 2

    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 100.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 10 (11 dpi)
    Days post injection

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC032160 RA
      MSTSTLPWR KRSFDDFES PIPVKRFNY YRLESESSP 
GSAADDTES IHSIQDKET DIVRDTSDT MSDSSEYDV 
DIEYEIESL SEGDDNIII FDSSGAESE GVMYAAAVV 
GDSSLETFI TDAEDSDNS RQDDSSSGL TDFWVCIQC 
KSQNDNPQF RFCDKCFQD RKAFFPPRP RRRKKAERS 
KEKSHSPVK LDALQSCLK GLSQDSGIG SSQEFESLG 
LDQIVIPNT EKPSTSLTE EGKNRKRQI SESSLSDEY 
EEKRPRKQP KTKENKENI EKKSGDESD VAKNATSEK 
SCAVLDGEP PKSPEADQI KGPLPELKE DCIMCNVQP 
KNSVFLHGR IAHMCCCYG CAMRTWKSL KRCPICQRK 
VSNVVRVFT T
    CDS sequence
    • >TC032160 RA
      atgtcgaca agcacgttg ccttggagg aagaggagt 
ttcgacgat ttcgaatct ccgattcca gtcaaacgc 
ttcaattat tatcggtta gaaagcgaa agctctcct 
gggagtgct gctgatgat acggaaagt attcacagc 
atccaggat aaagaaact gacattgtt agggatacg 
tcggatacg atgtcggat tcgtctgaa tacgatgta 
gatatcgaa tatgaaatt gagagtctg tctgaaggt 
gatgataac atcatcatt tttgactct tcgggtgct 
gagtctgag ggcgttatg tatgcagcc gccgtggtg 
ggagacagc tcgctcgaa accttcatc accgacgcc 
gaagactcc gacaacagc agacaggac gactcctcc 
tcaggtctc acggatttc tgggtttgc atacaatgc 
aaatcccaa aatgacaat ccacagttt aggttttgc 
gacaaatgc ttccaggat cgaaaggcg ttctttcca 
ccacgacca aggcgtcgc aaaaaagcc gaaaggagt 
aaagaaaaa tcccactcc cccgtcaaa ctagacgcg 
ttacagtcg tgtctcaaa ggcttgtct caggactct 
ggaattggt tcaagtcaa gagtttgaa tcgctcggt 
ctcgatcaa atcgtcatc cccaacact gaaaaaccc 
tcaactagt ctaactgaa gaaggaaaa aaccgcaaa 
cggcaaatc tccgaaagc agtctttcg gacgaatat 
gaggagaaa cgacccagg aagcaaccc aaaaccaag 
gagaacaag gaaaacatc gaaaagaaa agtggtgat 
gagagcgac gtagcgaag aacgcaacg agtgaaaaa 
agctgtgct gtgttggac ggggagccg ccaaagtca 
cccgaagcg gatcaaata aaaggtcct ttacctgag 
ttgaaagag gactgtatc atgtgtaac gttcaacct 
aaaaatagt gttttcttg cacggacgt atcgcacac 
atgtgttgt tgttacggt tgcgctatg cgaacatgg 
aagtcacta aaaaggtgc cccatttgc caacgaaaa 
gttagtaac gtggttagg gtcttcacc acttag
    mRNA sequence
    • >TC032160 RA
      ctatttccg gaagttcgt ggaaaagca cgcaagttt 
gtacaagtt taaagtggg caaggcaaa aaacgcgtc 
gttatcgct aaaactgta ggaaaaatg tcgacaagc 
acgttgcct tggaggaag aggagtttc gacgatttc 
gaatctccg attccagtc aaacgcttc aattattat 
cggttagaa agcgaaagc tctcctggg agtgctgct 
gatgatacg gaaagtatt cacagcatc caggataaa 
gaaactgac attgttagg gatacgtcg gatacgatg 
tcggattcg tctgaatac gatgtagat atcgaatat 
gaaattgag agtctgtct gaaggtgat gataacatc 
atcattttt gactcttcg ggtgctgag tctgagggc 
gttatgtat gcagccgcc gtggtggga gacagctcg 
ctcgaaacc ttcatcacc gacgccgaa gactccgac 
aacagcaga caggacgac tcctcctca ggtctcacg 
gatttctgg gtttgcata caatgcaaa tcccaaaat 
gacaatcca cagtttagg ttttgcgac aaatgcttc 
caggatcga aaggcgttc tttccacca cgaccaagg 
cgtcgcaaa aaagccgaa aggagtaaa gaaaaatcc 
cactccccc gtcaaacta gacgcgtta cagtcgtgt 
ctcaaaggc ttgtctcag gactctgga attggttca 
agtcaagag tttgaatcg ctcggtctc gatcaaatc 
gtcatcccc aacactgaa aaaccctca actagtcta 
actgaagaa ggaaaaaac cgcaaacgg caaatctcc 
gaaagcagt ctttcggac gaatatgag gagaaacga 
cccaggaag caacccaaa accaaggag aacaaggaa 
aacatcgaa aagaaaagt ggtgatgag agcgacgta 
gcgaagaac gcaacgagt gaaaaaagc tgtgctgtg 
ttggacggg gagccgcca aagtcaccc gaagcggat 
caaataaaa ggtccttta cctgagttg aaagaggac 
tgtatcatg tgtaacgtt caacctaaa aatagtgtt 
ttcttgcac ggacgtatc gcacacatg tgttgttgt 
tacggttgc gctatgcga acatggaag tcactaaaa 
aggtgcccc atttgccaa cgaaaagtt agtaacgtg 
gttagggtc ttcaccact tagtttagt ccaatagta 
tttaataaa ttagtaatt gtacagaat aaattttaa 
tttattaag gctagctta gttaggaaa ttaagcatc 
tcaaaaact taaagagtg actataaac caaagattc 
aggatatta ttagatttc tagttttta ttacaagtt 
gccatgtta ttttttatt cgaaccgat aaacaacat 
ttgttaaat tacggaacg tttgagtaa tgttcatag 
aaacactct ttagatttt tgaaatgct gaatacggg 
ggtcaaaaa attgtaagg aacgctttt gtgtatttt 
agtaacggg ttggggcat tacaaaagt cttaaagac 
ggtcacctc gcgcttatt tcctcagtc attaatatt 
atttctacg taatttgtt gtagagata catattatt 
taataccac gaattgttt tttatgatt cgctcataa 
aaaacttat tcacctgaa attaattac ttccattta 
gtttgttta atgtactca tcacaatga gaaactgtg 
caatttaac aaattttgt ttttcaaca attaaaaca 
gagtaatta caatttgag tctttcctt ttaattcca 
agcaaaatt tcgtgtttg gccgaagtt agcgtagga 
caacaaccg ttcatcaaa gtgcgagat tttattcaa 
acttgcata cggcaatgt ctttggagt aatggttcc 
tgtttaatg ttttcagaa atggattaa ctcgcgtgc 
tactgacga acccaacag gtgatgcca cctttgagt 
gcgaaaact tgctttggt gaatatttc ggcgaaaac 
acgggtgcg ggtgctttt attgttact aagaaagct 
acgaaaaaa gg
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY