Status
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Gene information
General information
TC014715 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007420.3: 13788692..13805860
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC014715
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
    We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_02328

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)

    pupa eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection

    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 0.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 0.0% (includes death as larva, prepupa, pupa, adult)

    Adult morphology
    club colour lighter - Number of animals showing the phenotype: 5


    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC014715 RA
      MMKHVQLSP YRSRADTVS LSSTTSYGS LSPEPLGSR 
SSSYSSLND SSSGNLQTT IKVYAKCLR PDIEYKTLS 
ITFQTTCKE VVATLLGKY KMKHRDPKL FYLSMEVTV 
RKAGVRTHL ALDEEARPA VLQSCHPRG DSKFSLQTR 
RGGLVKVHD SVLNSNSQY KSLLISART TVDELIALL 
LNCYNSKER VEQFSLYEV NTDKEQQRK LHPDDRPLQ 
VQQTWLPLH KCHFLVRRN PDYLPLSRR KIFWVSDLP 
PLPQSRLFQ SATQLTQIS KSQNSLVPT NTKEETKTK 
TAQLKSSKE YVSRNKNSD LKVFGSSSQ IAQNGSNSY 
ADYENYFYI
    CDS sequence
    • >TC014715 RA
      atgatgaaa cacgtgcag ctttctcct tacaggagc 
agagctgac acagtgtcc ctaagctca acgacatcc 
tacggaagt ctcagtcct gaaccgcta ggaagtcgc 
tcttcgagc tactcgtca ctcaatgac tcttcttca 
ggaaattta cagacaacc ataaaagtt tatgccaaa 
tgtttacga ccggatatc gagtacaag accctcagc 
atcactttc caaacgacg tgtaaagaa gtagtagcg 
acacttttg ggcaaatat aaaatgaag caccgagac 
ccgaaactt ttctatctc agtatggaa gttacggtt 
cgtaaagcc ggagttcga acacatctg gctttagat 
gaggaagcg agacccgcg gtgttacaa agttgccac 
ccaagaggc gattcgaag ttttccctc cagactcga 
cgcggaggc ttggtaaaa gtccacgat tcggtcctc 
aacagcaac tcgcagtat aaaagtcta ttaataagc 
gctaggaca acagtagat gaattaata gccctgctt 
ttgaattgt tacaacagc aaagaacgc gtggagcag 
ttctctttg tacgaagtc aacactgat aaggagcaa 
caaagaaaa ttacatccg gacgatagg cccctgcag 
gtgcaacaa acttggtta cccttacac aaatgccat 
ttcctagtc agaagaaac cccgactat ttaccgctc 
tcgcgaaga aaaattttc tgggtctct gacttgccg 
ccgttacct cagtccagg cttttccaa tcagccact 
caactcacc caaatctct aagtcacag aactctctg 
gttccgaca aacacgaag gaagaaacc aagactaaa 
acagctcaa ctcaagtcg agcaaagag tacgtcagt 
aggaacaaa aacagcgat ttgaaagtt ttcggaagc 
agttcacaa atcgcacaa aacggaagc aactcgtat 
gcggattat gagaattat ttttacatt tga
    mRNA sequence
    • >TC014715 RA
      cagcaagaa acaacggaa tttctctcc caacaccca 
ccctgaagg aaagtgtga gaatacgaa aagcctcca 
aacaataac actacaatg aacctgcct gcatcccac 
tatcatcca taatctgat agaaatgca ttttatggt 
gtctttggg acaagccga ggcagagta acgcgactc 
aaccgtggg ttaaagctc gcagctatc agtcgcgtt 
ttaacgttg gtgttggaa ggacgtggt gttggaaca 
cttcggcgc agctccatg tgctgcaca cgtttctga 
gtgcgtgtt ttcgtgaac ttttcccag ttgctgatt 
tttgggatt accattgac tgaagggat taccaagat 
gatgaaaca cgtgcagct ttctcctta caggagcag 
agctgacac agtgtccct aagctcaac gacatccta 
cggaagtct cagtcctga accgctagg aagtcgctc 
ttcgagcta ctcgtcact caatgactc ttcttcagg 
aaatttaca gacaaccat aaaagttta tgccaaatg 
tttacgacc ggatatcga gtacaagac cctcagcat 
cactttcca aacgacgtg taaagaagt agtagcgac 
acttttggg caaatataa aatgaagca ccgagaccc 
gaaactttt ctatctcag tatggaagt tacggttcg 
taaagccgg agttcgaac acatctggc tttagatga 
ggaagcgag acccgcggt gttacaaag ttgccaccc 
aagaggcga ttcgaagtt ttccctcca gactcgacg 
cggaggctt ggtaaaagt ccacgattc ggtcctcaa 
cagcaactc gcagtataa aagtctatt aataagcgc 
taggacaac agtagatga attaatagc cctgctttt 
gaattgtta caacagcaa agaacgcgt ggagcagtt 
ctctttgta cgaagtcaa cactgataa ggagcaaca 
aagaaaatt acatccgga cgataggcc cctgcaggt 
gcaacaaac ttggttacc cttacacaa atgccattt 
cctagtcag aagaaaccc cgactattt accgctctc 
gcgaagaaa aattttctg ggtctctga cttgccgcc 
gttacctca gtccaggct tttccaatc agccactca 
actcaccca aatctctaa gtcacagaa ctctctggt 
tccgacaaa cacgaagga agaaaccaa gactaaaac 
agctcaact caagtcgag caaagagta cgtcagtag 
gaacaaaaa cagcgattt gaaagtttt cggaagcag 
ttcacaaat cgcacaaaa cggaagcaa ctcgtatgc 
ggattatga gaattattt ttacatttg aaatttttt 
ttgttcctg tgtgagtct agttggttt ttggatgtg 
atagatgca gcctaaaat tgattattt taaccaaag 
atttccaga aagtctctc ttttaaatt tgaattttg 
ttcgtcttg aagtaataa atgtttgag tgtaataat 
ttgtggact atttggagt agttttata atcatacct 
gattagcgc acagcgtct atttattgt ttgatagat 
taattgtgt aatgagttt tttccttat gtgtgtagt 
taaactaaa tgttaatct attcgtacg tctgatgtg 
tttacccaa agactagaa ttaaaacat aattttgga 
aacgtatct gtataacta actgtgcaa tgtgtatat 
aaaaatacc aaagaatca ctgtaaata cctttgtat 
gtattttaa tttaaggtt ttagaccat tttgaataa 
aggaagtta aaaaag

    If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
    Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY