General information | |||
TC011211 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007425.3: 2112664..2114511 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs | TC011211 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_01827 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 20.0% (includes death as pupa, adult)
adult lethality - Number of animals showing the phenotype: 2 (9 dpi)Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 20.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 20.0% (includes death as larva, prepupa, pupa, adult)
- >TC011211 RA
MLTKLLLLA ILCQSFAEV YENTFDCED HFSESHENG TIEYHNFVT TNVKFYLYT PPPDNDTIE LNSTNLHLV NLTQPTKII IHGLQSYEN QVWVDKMVQ NYHTKGDYN IIAVDWSVI SSDETFYVV SAVDDLGRY VGDFIMEVT QDNYQYLSD VHLIGSSLG AQIAGAAGS AISNKTNAR VDRITGLDP TQPENLQLL DENTAEFVD VIHTTLYYG QESCGTVDF YVMAEDPQR PICYNDTCV ELLGDDYYA VTIIDEDRF EGVTCYNTS LAVQRLCDK AKSAVMGEY VPRDVTGSF LVKDSAGVI YSGRRVLFS IISTLLLLR LIV
- >TC011211 RA
atgttgaca aaacttctc ctcctcgcc attctctgc caaagcttt gctgaagtc tacgagaac acttttgac tgcgaagac catttcagc gaaagccac gaaaatggt accatagag taccataac ttcgtcacc acgaacgtg aaattctac ctttacact cctccaccc gacaatgac accatcgag ctgaattcg accaactta cacttggtc aatttgacc caacccacg aaaatcatc atccatggt ctccagtcg tacgaaaac caggtatgg gtggacaaa atggtacag aactaccat acaaagggc gattacaac ataatcgcg gtggattgg tccgttatc tcctcggac gaaactttc tacgttgtt tccgccgtg gatgacctc gggcggtac gtgggggac ttcatcatg gaggtcacc caggacaac taccagtac ctctctgac gtccacttg atcggctcc tcactaggt gcgcaaatc gcaggggct gctggaagc gcaatttcc aacaaaacc aacgccaga gttgaccga ataaccggc ctggaccca actcagccg gaaaacttg cagcttttg gacgagaac actgcagag tttgtcgat gttatccat acgacgctc tactatggc caggagagt tgtgggacg gttgatttt tatgtcatg gctgaggat ccacaaaga cccatttgt tataacgat acttgtgta gagctttta ggggatgac tattacgcg gtcactatc atcgatgag gatagattt gaaggggtt acatgctat aatacctct ctagccgtt cagagattg tgtgataag gccaaatcg gctgttatg ggagaatat gtgccaagg gatgtcacc gggagcttt ttggttaaa gattcagcg ggagtgatt tattcagga aggagggtt ttgttctcg attatttcg acattactt ctgttgcgt ttaatcgtc tag
- >TC011211 RA
accatatga ttttacttt gaggactaa attataaaa gatgatgtt ttcaacttg agaacagca tttcgtttt cagtaacaa gttgagact ggctaagag gataaatga aacattcaa aattttcaa tgttttttt acttttttt tgtctaaaa ttgggcatt ttgtaagcc aacatcttc aaaatcagt taaaaataa ccactttgt agcatattt ctgtatttt tagccacct gacacatgg acgtcctat tatcagttc tcgaattat taatgactc ctcgcccat aataagtct gataactat gagccacat ccattattc cctcgttaa aaaagcaac tatctagca aaaataaat tttaatttg tacatttta cgccagtta ttgcaaggc caaaacaac aaaacgacg caatgttga caaaacttc tcctcctcg ccattctct gccaaagct ttgctgaag tctacgaga acacttttg actgcgaag accatttca gcgaaagcc acgaaaatg gtaccatag agtaccata acttcgtca ccacgaacg tgaaattct acctttaca ctcctccac ccgacaatg acaccatcg agctgaatt cgaccaact tacacttgg tcaatttga cccaaccca cgaaaatca tcatccatg gtctccagt cgtacgaaa accaggtat gggtggaca aaatggtac agaactacc atacaaagg gcgattaca acataatcg cggtggatt ggtccgtta tctcctcgg acgaaactt tctacgttg tttccgccg tggatgacc tcgggcggt acgtggggg acttcatca tggaggtca cccaggaca actaccagt acctctctg acgtccact tgatcggct cctcactag gtgcgcaaa tcgcagggg ctgctggaa gcgcaattt ccaacaaaa ccaacgcca gagttgacc gaataaccg gcctggacc caactcagc cggaaaact tgcagcttt tggacgaga acactgcag agtttgtcg atgttatcc atacgacgc tctactatg gccaggaga gttgtggga cggttgatt tttatgtca tggctgagg atccacaaa gacccattt gttataacg atacttgtg tagagcttt taggggatg actattacg cggtcacta tcatcgatg aggatagat ttgaagggg ttacatgct ataatacct ctctagccg ttcagagat tgtgtgata aggccaaat cggctgtta tgggagaat atgtgccaa gggatgtca ccgggagct ttttggtta aagattcag cgggagtga tttattcag gaaggaggg ttttgttct cgattattt cgacattac ttctgttgc gtttaatcg tctagtttt aaaatattt gtacttgtt ttagtttgt ctaggtaag taaattcag tttagaatt gtttgactt ttatcgagc ttaaaaata atatgaata ttaaatacg ctgtttttg ccgagttat caactggaa ttttaagtt gctttaatg tttgtatta ttataacaa ggttaaata cgtaagaaa taaagcgtt gattaaatg aatggcttt tacattcat tcaaaatac tgtaattaa aatcccact agaagttga atggtaatg cgtttcagc gatttttag tcatcctta tcgcttaat tatttaaaa aaatatggt ttaattaac tttgcctaa cgttattaa ttaa
