Status
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Gene information
General information
TC010894 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007420.3: 1889168..1890815
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC010894
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
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    Publish name
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_01757

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 20.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
    Days post injection

    Analysis of embryonic musculature and early development
    number of eggs/embryos/larvae on slide: > 50 larval musculature irregular - Penetrance (percentage of animals/eggs on slide): 30% - 50%

    affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): 30% - 50%
    remarks: muscle pattern potentially obscured by segmentation defect,
    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: > 50
     antenna not present - Penetrance (percentage of animals/eggs on slide): 30% - 50%
    antenna shape irregular - Penetrance (percentage of animals/eggs on slide): 30% - 50%
    legs number increased - Penetrance (percentage of animals/eggs on slide): more than 80%

    abdomen segment number decreased - Penetrance (percentage of animals/eggs on slide): 50% - 80%
    affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): more than 80%
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 20.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 50.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection

    eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 2 (16 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 1 (19 dpi)
    Days post injection

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC010894 RA
      MFTKYFLCV CIVCYFSLA QETKPLQYN DRNFDTKMN 
EHEVALVLF YAPWCNHCI QFLPKFADA AKQSEESSR 
PIAFVMVDC ENDGKQTCE KFGVSSFPT LKIFRNGKF 
LKAYEGPRE APAIAKYMK AQVDGDSRE LGSVAELED 
FLSTDEVSV VGFFESDSY LKVVFFKVV DKMKHKIRF 
GHSTSEAVM LQQEVADGI VLFRPPHLH NKFEKSSVL 
YEGDAETDE IIQFIMDNY HGLVGHRRK DLEEFEKEP 
LVAVFYAVD YKKNTKRTN YWRNRVLPV AKKYENQFY 
FVISDKDEF KSELKGHKL YEKNLTKPV VLAQNFRKR 
LFKMKEPFS TEALDNFVQ DILDGKLEP EMKSEPIPE 
VNNGSVTIA VAKNFDKLV YDNGVDTVV LLTGPDCDE 
CIIVEKPYE ELGEKMKNE DIAVIKMDI SKNSSPQEL 
ELDGIPSIF FLPKDSKDY PILHKGDFY IDDFIQFVA 
QHATNELKG YYRNGKPRP ERTEL
    CDS sequence
    • >TC010894 RA
      atgtttaca aaatacttc ctctgcgtc tgcatcgta 
tgttacttc agtctggcc caagaaaca aagcctttg 
caatacaac gacaggaac tttgacacc aaaatgaac 
gagcacgaa gtggccctt gtgttgttt tacgcacct 
tggtgtaac cactgcatc cagtttctg cccaaattt 
gcggacgct gcaaagcaa tcagaggag agcagccgt 
ccgattgcc tttgtcatg gttgactgt gaaaacgac 
ggtaaacaa acttgtgaa aagtttggc gtcagctcg 
ttccccaca ctgaaaatt ttccgcaac ggcaagttc 
ttgaaagcg tacgagggg cccagagag gccccagct 
atagcaaag tatatgaag gcgcaagtt gacggcgac 
tcgcgggag ctgggcagt gttgcagag ctggaggat 
tttttatct actgacgag gtctcggtg gttggtttt 
tttgaaagt gactcttat ttgaaagtg gttttcttt 
aaagtggtt gataaaatg aaacacaag ataaggttc 
gggcactcc acctcggag gctgtgatg ctgcagcag 
gaggttgcc gacgggatt gtgctgttc cgtcctcca 
catctacac aacaagttc gaaaagagc agtgttttg 
tatgaagga gacgccgaa actgacgaa atcattcag 
tttataatg gacaactac cacggtttg gtgggacac 
cgcagaaag gacttggag gagtttgaa aaagagccg 
cttgtggcc gttttctac gccgttgat tacaagaag 
aatactaag aggacaaat tactggcga aacagagtc 
ctgccagtt gcgaagaaa tacgaaaac cagttctat 
ttcgtcatc tctgataag gacgagttc aaatcagaa 
cttaaaggg cataagctt tacgaaaaa aacctgaca 
aagcctgtg gttttggcc caaaacttc agaaaacgc 
ttgttcaaa atgaaagaa ccattctct actgaggct 
cttgataac ttcgtgcag gatatcctc gacggaaaa 
ctggagcct gaaatgaaa agtgaaccg atccctgaa 
gtcaacaat ggatcggtt acaattgct gtggcgaaa 
aactttgat aaacttgtt tacgataat ggagttgac 
acagttgtt ctactgact ggccccgat tgcgatgaa 
tgcataatt gtcgaaaag ccctatgaa gaactcggt 
gaaaaaatg aagaacgaa gacattgca gttattaaa 
atggatatt tcaaaaaat agctcgcct caagaatta 
gagttagac ggtatccct tctatattt ttcctgccg 
aaggattct aaagactat ccgattcta cacaaaggt 
gatttttat atagacgat tttatacaa tttgttgct 
caacatgca acaaacgaa cttaaagga tattacaga 
aacgggaaa cctagaccg gaaagaact gaactttga
    mRNA sequence
    • >TC010894 RA
      tgatgacac taaacaagt ttcactgac agcattttg 
tattattta ttttgacac gaatagttt gtttaaaaa 
aatattgaa acatgttta caaaatact tcctctgcg 
tctgcatcg tatgttact tcagtctgg cccaagaaa 
caaagcctt tgcaataca acgacagga actttgaca 
ccaaaatga acgagcacg aagtggccc ttgtgttgt 
tttacgcac cttggtgta accactgca tccagtttc 
tgcccaaat ttgcggacg ctgcaaagc aatcagagg 
agagcagcc gtccgattg cctttgtca tggttgact 
gtgaaaacg acggtaaac aaacttgtg aaaagtttg 
gcgtcagct cgttcccca cactgaaaa ttttccgca 
acggcaagt tcttgaaag cgtacgagg ggcccagag 
aggccccag ctatagcaa agtatatga aggcgcaag 
ttgacggcg actcgcggg agctgggca gtgttgcag 
agctggagg attttttat ctactgacg aggtctcgg 
tggttggtt tttttgaaa gtgactctt atttgaaag 
tggttttct ttaaagtgg ttgataaaa tgaaacaca 
agataaggt tcgggcact ccacctcgg aggctgtga 
tgctgcagc aggaggttg ccgacggga ttgtgctgt 
tccgtcctc cacatctac acaacaagt tcgaaaaga 
gcagtgttt tgtatgaag gagacgccg aaactgacg 
aaatcattc agtttataa tggacaact accacggtt 
tggtgggac accgcagaa aggacttgg aggagtttg 
aaaaagagc cgcttgtgg ccgttttct acgccgttg 
attacaaga agaatacta agaggacaa attactggc 
gaaacagag tcctgccag ttgcgaaga aatacgaaa 
accagttct atttcgtca tctctgata aggacgagt 
tcaaatcag aacttaaag ggcataagc tttacgaaa 
aaaacctga caaagcctg tggttttgg cccaaaact 
tcagaaaac gcttgttca aaatgaaag aaccattct 
ctactgagg ctcttgata acttcgtgc aggatatcc 
tcgacggaa aactggagc ctgaaatga aaagtgaac 
cgatccctg aagtcaaca atggatcgg ttacaattg 
ctgtggcga aaaactttg ataaacttg tttacgata 
atggagttg acacagttg ttctactga ctggccccg 
attgcgatg aatgcataa ttgtcgaaa agccctatg 
aagaactcg gtgaaaaaa tgaagaacg aagacattg 
cagttatta aaatggata tttcaaaaa atagctcgc 
ctcaagaat tagagttag acggtatcc cttctatat 
ttttcctgc cgaaggatt ctaaagact atccgattc 
tacacaaag gtgattttt atatagacg attttatac 
aatttgttg ctcaacatg caacaaacg aacttaaag 
gatattaca gaaacggga aacctagac cggaaagaa 
ctgaacttt gaaggacga acgcacaaa acgctaaat 
tgtcatgtt gcagtatgt ttttttgta attaaaatg 
tccagcaca atacataat attacacaa a

    If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
    Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY