General information | |||
TC033679
Former TC numbers If one gene is splitted or genes are merged, the original TC numbers are listed. One listed former TC number indicates the previous gene has be splitted, serveral former TC number represents a merged gene. |
Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007422.5: 7273333..7277599 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs | TC033679 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_01467 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 100.0% (includes death as pupa, adult)
adult lethality - Number of animals showing the phenotype: 9 (9 dpi)Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 100.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)
- >TC033679 RA
MGSLPRTSK SSLSAGTPD SLSDNESSA FRTPRKPSY RSTMTPGGS RSNSRPASR TGSRPGSKP PSRHGSNLS LDSTDDGTP SRIPRRTPT SSRVPSTTS SLRRPQNGT GSRPRTPTG LISPASPAG KSSGIPRAS SIPTLTSVT TPRSTSKPR QVTIGNAPT LRTAARTRT PSGSNTPVP PGQQTAASR LLRKPSGAS DTPTGQAKK TTKEREPFR L
- >TC033679 RA
atgggcagc cttccgcgc acttccaaa tcctcctta tcagcgggg acccccgac tcgttatca gacaacgaa agttctgct ttccgcacg cccagaaaa ccatcttac aggtcaacg atgacccca ggagggtct aggtcgaac tcacgaccg gcgtcgcga actggcagc aggcctggc agcaaaccc ccatcgaga catggttct aacctctcc ctagatagt acagatgat ggtaccccg tcgaggatt ccacgaagg accccaacg tcaagtcgg gtaccatcg acaacttct tctttgcgg aggccccag aatggcacc gggtcccgg ccgaggaca cccacgggg ctcatttca ccagctagt ccagccgga aaatcatca ggcattccc cgagcatca agtatacca acactaacg tcagttacc accccaagg agtacaagc aaaccacga caagtgaca atcggtaac gctccgacg ctaaggacg gcggctagg acacgaaca ccatccggg tctaacaca cccgttccg cccgggcaa caaaccgcc gcttcccgc cttctacga aaaccatcg ggagcgtcc gacacgcca acagggcaa gcgaagaaa acaacaaag gaacgggag ccttttaga ctttaa
- >TC033679 RA
aatttgaga ggtcctaaa ccatagttt tatttccac tgtaatata cgcacacgg gacgatctc ttcccgttt tagcaatta gtgcatttc cttttattt ttatttttt tagaatttt tgcttattt tgtttttgt ttttttttc tcctttcac gtgtcccct accgcacta acttgtttt ctgttactt acttccttt tcctcgtcc tgaaattcc tcacacagc caaaggacg cacgaacat agagctgcg tgaacaatt catcctagc cgacggcgt atcgcaaac tatgaccgc gttcaagcc caaaacatc ggcctccag tcccgcctc tggctcctc tgcatcatc actccgcac tcctcaagg gccaatcac taaggtatt gcacaagag caccctctt tgatccgga aaaagcatc gaaaatact atccttgtc ctcgatccc agtcggttg tggagtatt gttttcagt gcttttttc gagttgctc tatgtcttg gtaatggta cgcttgtat acgtagtac agtagttgg ccaccagag ggtaaaggt aagtcggac ctcaggaga tgaattttg tgaacgcga caacaacaa gggccgaag cataaaaca aaatcgcct cacgttcat tcagcactc gatgcttct tttttctgt tcgcaccat ctaaacgcg acgatcact attggatta tttcggaca cgctgtata tttctgaat gttggcatg tgctattgt ttagctcac gaacacttg gcggagttg atgcccata ttcgagcag ctgagggcc aaaggagaa gtgggcaat gcgtaccct ttgcatgtc ggttctact gctggaccc accttacac tgggctcct ctcaatatc aacaacact tgtcactgg gtaataata cacacagac actttgtgc atgtgcatg gtgtgtacg tctcttctc tcgtttttt ttgcaaaat catcattta tcgttaaat cgagtcgag tttcaatcg taccgtttt tcttgtttt tataccagt cgctgttat cgggccgga aaaagacca ccacaaact tttgtacct atcgcaagt accgatggt aggtatacc gcaggtaag acgaataaa tcgctcatt acttttggt ctttctttc caaaatttc taaaaccgg cccaatttt tactaagat cattttaac gttaccgga tgaggtaag acaggaaac tgtaagtag cgttttgtt atgcaatca aggatcttc aatttacat tttttaatc acacacttg ttaacgtag cgtcttgtc actgttatc taacacgaa gatcctttt tttgtgggt gcacgactc gtatcaatt gttggccct taccaacaa ctggtactc ttccactca cccatcctt actaaaaat tactgttta ggtgcgaga gcgttcagc aaggtcggt tccaatggg cagccttcc gcgcacttc caaatcctc cttatcagc ggggacccc cgactcgtt atcagacaa cgaaagttc tgctttccg cacgcccag aaaaccatc ttacaggtc aacgatgac cccaggagg gtctaggtc gaactcacg accggcgtc gcgaactgg cagcaggcc tggcagcaa acccccatc gagacatgg ttctaacct ctccctaga tagtacaga tgatggtac cccgtcgag gattccacg aaggacccc aacgtcaag tcgggtacc atcgacaac ttcttcttt gcggaggcc ccagaatgg caccgggtc ccggccgag gacacccac ggggctcat ttcaccagc tagtccagc cggaaaatc atcaggcat tccccgagc atcaagtat accaacact aacgtcagt taccacccc aaggagtac aagcaaacc acgacaagt gacaatcgg taacgctcc gacgctaag gacggcggc taggacacg aacaccatc cgggtctaa cacacccgt tccgcccgg gcaacaaac cgccgcttc ccgccttct acgaaaacc atcgggagc gtccgacac gccaacagg gcaagcgaa gaaaacaac aaaggaacg ggagccttt tagacttta attaattat gagattaac ttattccaa gattaacga atgactgac agtagggtt attgtgttt ttgtttaaa ttgttcata tttttgtat aaaagattt atttatgaa gcggccccg gaaacgcca gttccggag ttgaattat tgtgtgagt cacaatacg taactgcgt taagttgcc ataaattgc aaaattatt ttcgtgagg tgatttttg tattatttt ttgggtatc agtgggacc attttgtgg cgatttgct ttgtttagt ggacgttta tttgattta tcctactaa cttacttat tttatcctt aataattta gatactaaa gcgccgcta atactcgta gttgtgtga ttaccagaa acgcctttc ttttatatc gccagtatg aaagaacgg atcagtcaa tattgtaac tattactat atttaattt gttatgtat taaaacaat aaactaaat tttttaag
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
