Status
Please wait ...
Gene information
General information
TC009001 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

scaffold_seqid49: 2246901..2249078
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC009001
    iBeetle screen iB_01454
    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 40.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 4 (3 dpi)
    Days post injection


    Fertility
    ovary without detectable defects - Number of animals showing the phenotype: 4
    Analysis of embryonic musculature and early development
    number of eggs/embryos/larvae on slide: > 50 larval musculature irregular - Penetrance (percentage of animals/eggs on slide): less than 30%

    affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): less than 30%
    remarks: muscle pattern potentially obscured by segmentation defect,
    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 50
    cuticle remnants strongly fragmented (cuticle crumbs) - Penetrance (percentage of animals/eggs on slide): less than 30%

    abdomen segment number decreased - Penetrance (percentage of animals/eggs on slide): less than 30%

    affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): less than 30%
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 10.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 20.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 2 (41 dpi)
    Days post injection


    Fertility
    egg production: number <50% of expected -
    mature egg deposition blocked number 1st lateral oviduct: 3 number 2nd lateral oviduct: 2 - Number of animals showing the phenotype: 4
    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC009001 RA
      MILEQGISE QFKINNDMI HDARRFLEL KSQGDVGKS 
      SIKDFQDFK LPVLVFACN RVSVSRCLD RLLQYRPDP 
      DKFPIIVSQ DCNHEETTE TIRRYGSQV SLIQQPDQS 
      DIQVPPKEK KFKGYFKIA RHYGWALNQ MFFNFNFST 
      VIIVEDDLE VAPDFFEYF LGTYSILTR DPTLWCVSA 
      WNDNGKEGL VDENRPDLL YRTDFFPGL GWMLTKSLW 
      LELYTKWPR AYWDDWIRD PSQRKGRAC VRPEISRTR 
      TFGKFGVSN GMFFEKHLK YIKLNEKFV PFTKMNLSY 
      LVKQAYDRD FIRDVYQSV IVSYQELKE GKVAHDGPV 
      RIVYRSKEE YKIFTKKLG LMDDFKSGV PRTAYKGIV 
      TFHYKGRMV HLAPNVNWK GYDLTWS
    CDS sequence
    • >TC009001 RA
      atgatactg gaacaaggc atatcagaa cagtttaaa 
      ataaacaat gacatgatc catgacgct aggaggttt 
      ttggaattg aagagccaa ggggacgtt ggcaaaagt 
      agtataaag gatttccaa gacttcaaa ttgccagta 
      ctagtattt gcgtgcaat agagttagt gtcagtagg 
      tgcttagat aggcttttg caatacaga ccagaccct 
      gacaaattt ccaataatc gtgagccaa gactgcaat 
      catgaggaa accaccgag actataaga cggtacgga 
      tctcaagtg tcacttatc cagcaacca gaccaatcc 
      gatattcag gtacctccc aaagaaaaa aagttcaag 
      ggatatttc aaaattgcg cgtcactac ggctgggcc 
      ctcaaccaa atgtttttt aattttaac tttagtact 
      gttattata gttgaagac gacttggag gtggctcca 
      gacttcttt gagtatttc cttggtact tactccatt 
      ttaacgcgc gacccgacc ctctggtgc gtctccgcc 
      tggaacgac aacgggaag gagggtctg gtggacgaa 
      aatcgccca gatttgttg taccgcacg gacttcttt 
      cccggcttg gggtggatg ttgacgaag tccttgtgg 
      ctggaactg tacaccaag tggccgagg gcctattgg 
      gacgattgg atacgcgac ccgtcgcag agaaagggc 
      agggcgtgc gttagaccg gaaatatcg aggacgagg 
      acgtttggc aagtttggg gtttcaaat ggtatgttt 
      ttcgagaag cacttaaag tacataaaa ctgaacgag 
      aagtttgtg ccttttacc aaaatgaac ctgagctac 
      ttagtgaag caggcgtat gatagggat tttattaga 
      gatgtttac caaagcgtg atagtcagt taccaggag 
      ttgaaagag ggcaaagtc gcccacgat gggcccgtg 
      aggatcgtt tatcgctca aaggaagag tataaaata 
      ttcacgaaa aagttgggg ctcatggac gattttaag 
      agtggggtc ccccgaact gcgtacaag ggtattgtc 
      actttccac tacaagggc cgaatggtg cacttggcc 
      cccaatgtg aactggaag gggtacgac ctgacgtgg 
      agctaa
    mRNA sequence
    • >TC009001 RA
      aatatactt gtgacgtta gttggtccc caaatgtta 
      aaaactatt aatttgtta aaatgctac gtgtttaat 
      gtaaatgat acgttgtgt gataaacaa tagcacttc 
      cgcaaaatg gctaaacat ccgacagtg atagaaatc 
      aaatcatta tgattttgc aggataggg acactctaa 
      gataataaa ataacatgc gactgaaac gcacaaact 
      tcgtactag gaatattcg taataactt gggctttag 
      tgttgtatt ttgcattcc tgtcccatc taacaacta 
      aaagtgaac caaatggaa acgtcgata gccaaatca 
      tgatactgg aacaaggca tatcagaac agtttaaaa 
      taaacaatg acatgatcc atgacgcta ggaggtttt 
      tggaattga agagccaag gggacgttg gcaaaagta 
      gtataaagg atttccaag acttcaaat tgccagtac 
      tagtatttg cgtgcaata gagttagtg tcagtaggt 
      gcttagata ggcttttgc aatacagac cagaccctg 
      acaaatttc caataatcg tgagccaag actgcaatc 
      atgaggaaa ccaccgaga ctataagac ggtacggat 
      ctcaagtgt cacttatcc agcaaccag accaatccg 
      atattcagg tacctccca aagaaaaaa agttcaagg 
      gatatttca aaattgcgc gtcactacg gctgggccc 
      tcaaccaaa tgtttttta attttaact ttagtactg 
      ttattatag ttgaagacg acttggagg tggctccag 
      acttctttg agtatttcc ttggtactt actccattt 
      taacgcgcg acccgaccc tctggtgcg tctccgcct 
      ggaacgaca acgggaagg agggtctgg tggacgaaa 
      atcgcccag atttgttgt accgcacgg acttctttc 
      ccggcttgg ggtggatgt tgacgaagt ccttgtggc 
      tggaactgt acaccaagt ggccgaggg cctattggg 
      acgattgga tacgcgacc cgtcgcaga gaaagggca 
      gggcgtgcg ttagaccgg aaatatcga ggacgagga 
      cgtttggca agtttgggg tttcaaatg gtatgtttt 
      tcgagaagc acttaaagt acataaaac tgaacgaga 
      agtttgtgc cttttacca aaatgaacc tgagctact 
      tagtgaagc aggcgtatg atagggatt ttattagag 
      atgtttacc aaagcgtga tagtcagtt accaggagt 
      tgaaagagg gcaaagtcg cccacgatg ggcccgtga 
      ggatcgttt atcgctcaa aggaagagt ataaaatat 
      tcacgaaaa agttggggc tcatggacg attttaaga 
      gtggggtcc cccgaactg cgtacaagg gtattgtca 
      ctttccact acaagggcc gaatggtgc acttggccc 
      ccaatgtga actggaagg ggtacgacc tgacgtgga 
      gctaaccga aagattcct agttactta cacaattcc 
      atgtttgat attaatata tttgttgtt ttatgtttg 
      cacattaaa aatgtggac tgttggaat tttaatttt 
      gttctaatc aagttgaaa attgtgata aagtttgta 
      atggcaact tgcgagttg gctagataa atgcgagca 
      tttagtcta gcccgctaa tctgtataa gttcaaata 
      tcgactgct cgataaatt gttatgcca attaagaca 
      tgtacatag aaagcgagc gagctgcca atatttatg 
      ttttatatt ctaaacatt tttgcattt atacaatag 
      aatacgcaa gattgtaaa atatgtagt tcaatttag 
      caatatctt atgttgtaa gttttgaca gctcattcg 
      cagtatatg aatcgcgct tcttaatgt aaataaaag 
      tggataatt aataaaatt gtacaaagt tt