Status
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Gene information
General information
TC032792
Former TC numbers

If one gene is splitted or genes are merged, the original TC numbers are listed. One listed former TC number indicates the previous gene has be splitted, serveral former TC number represents a merged gene.

TC007503,TC007505 		Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007419.2: 3557586..3642343
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC032792
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
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    Email
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_01205

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection

    Analysis of embryonic musculature and early development
    number of eggs/embryos/larvae on slide: > 50 larval musculature pattern irregular - Penetrance (percentage of animals/eggs on slide): less than 30%

    affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): less than 30%
    remarks: muscle pattern potentially obscured by segmentation defect,
    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: > 50
     procephalic head partially not present - Penetrance (percentage of animals/eggs on slide): less than 30%

    head not present - Penetrance (percentage of animals/eggs on slide): less than 30%

    thorax not present - Penetrance (percentage of animals/eggs on slide): less than 30%
    abdomen not present - Penetrance (percentage of animals/eggs on slide): less than 30%
    affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): 50% - 80%
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 30.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 30.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality early (L5/6) - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC032792 RA
      MPGEEELHL NGVGRTQIY QPSTGEKHV LFYPTSPAP 
SVNSDERRS WSQASSSLA TQTRSNHRN SNNNADTGA 
RMKTSEAAP QPDAGAHPS DPNDGFRAR YNFRIGIYG 
WRKRCLYIL ILVLLVMVI VNLALTLWV LKVMEFSSE 
GMGQLKIVS GGLRLEGKA FVLDTLIAS SIKSRTGQP 
IIVESSRNL TLASRSKNG LLSNMIFLG DDRFECLTS 
TFKVMDDRG VVLFAADPR EVVVGAESL RVTGEGGAS 
FSGSVQTTL VRAEPGNDL RLESPTRSL EIHGPQGVH 
MESRGGKMK IVSLNDISF KSEVGSIHL DASSILMPM 
LPTAIPTSK PAPNKNQIF QVCVCNNGR LFLVPSHLH 
CAAEEDDRI CR
    CDS sequence
    • >TC032792 RA
      atgccgggc gaagaagag ctgcacctc aacggcgtc 
ggccggacc caaatctac cagccctcc acgggggaa 
aagcacgtc ttgttctac cccacaagt ccggcgccg 
tcggtcaat tcggacgag aggaggagc tggtcgcag 
gcctcgtcc tccctagcc actcaaacg cggagcaat 
cacagaaat tccaataat aacgcagat accggcgct 
agaatgaag acaagtgaa gcggcgcca caacccgac 
gcgggggcg cacccttcg gaccccaac gacggcttc 
cgagccaga tataacttc aggattgga atttatgga 
tggaggaag cgatgtctt tatatcctc atccttgtg 
ctgctcgtg atggtgatt gtcaatttg gccctcacg 
ctgtgggtc ctcaaagtt atggaattc tcctcggaa 
ggcatgggt caactcaaa atcgtaagc ggaggatta 
cgactcgag ggcaaagct ttcgtcttg gacactctg 
atcgccagc agcatcaaa tccaggacc ggacagccg 
ataattgtc gagtcgagc agaaacctg acgctggcg 
tccaggagc aagaacgga ctgctcagc aacatgata 
ttcctaggg gacgaccgc ttcgagtgc ctgacgagc 
accttcaag gtgatggac gaccgagga gtggtgctg 
tttgcggcg gacccgcgc gaagtggtc gtgggggcg 
gaaagtctg cgggtgacg ggcgaaggg ggcgcctct 
ttcagcggc tcggtgcag acgacgctg gtgcgggcc 
gagcccggc aacgacttg cgcttggag tcgccgacc 
cgctcgctg gagatccac ggcccccag ggggtgcac 
atggagtcc cgcggcggc aaaatgaag atcgtgtcc 
ttgaacgac atctcgttc aaatcggag gtgggctcc 
atccacctg gacgccagc tcgatcctt atgccgatg 
ctgcccacc gccatcccc acctccaag cccgccccc 
aacaaaaac caaattttc caagtgtgt gtgtgcaac 
aacggccgc ctgttcctc gtcccgtct cacctgcac 
tgtgccgca gaggaagac gacagaatc tgccggtaa
    mRNA sequence
    • >TC032792 RA
      aatcgcgct cagtccgac gcggacgtg gagagcgtc 
gccggcgtc gtctccaga cgcaatgtc gcgatcgca 
ataacagtc gcgcgatgc cgggcgaag aagagctgc 
acctcaacg gcgtcggcc ggacccaaa tctaccagc 
cctccacgg gggaaaagc acgtcttgt tctacccca 
caagtccgg cgccgtcgg tcaattcgg acgagagga 
ggagctggt cgcaggcct cgtcctccc tagccactc 
aaacgcgga gcaatcaca gaaattcca ataataacg 
cagataccg gcgctagaa tgaagacaa gtgaagcgg 
cgccacaac ccgacgcgg gggcgcacc cttcggacc 
ccaacgacg gcttccgag ccagatata acttcagga 
ttggaattt atggatgga ggaagcgat gtctttata 
tcctcatcc ttgtgctgc tcgtgatgg tgattgtca 
atttggccc tcacgctgt gggtcctca aagttatgg 
aattctcct cggaaggca tgggtcaac tcaaaatcg 
taagcggag gattacgac tcgagggca aagctttcg 
tcttggaca ctctgatcg ccagcagca tcaaatcca 
ggaccggac agccgataa ttgtcgagt cgagcagaa 
acctgacgc tggcgtcca ggagcaaga acggactgc 
tcagcaaca tgatattcc taggggacg accgcttcg 
agtgcctga cgagcacct tcaaggtga tggacgacc 
gaggagtgg tgctgtttg cggcggacc cgcgcgaag 
tggtcgtgg gggcggaaa gtctgcggg tgacgggcg 
aagggggcg cctctttca gcggctcgg tgcagacga 
cgctggtgc gggccgagc ccggcaacg acttgcgct 
tggagtcgc cgacccgct cgctggaga tccacggcc 
cccaggggg tgcacatgg agtcccgcg gcggcaaaa 
tgaagatcg tgtccttga acgacatct cgttcaaat 
cggaggtgg gctccatcc acctggacg ccagctcga 
tccttatgc cgatgctgc ccaccgcca tccccacct 
ccaagcccg cccccaaca aaaaccaaa ttttccaag 
tgtgtgtgt gcaacaacg gccgcctgt tcctcgtcc 
cgtctcacc tgcactgtg ccgcagagg aagacgaca 
gaatctgcc ggtaatcgg gccgacaca ccgtgtaca 
tagactgta taaaaagcg ccaaattgt tcatattgt 
acatatttt gtatatgaa tagggtctg ggtatagga 
cggttcggt taagttttc tatttattt acagctaga 
tcgagccta atgtgaaat gtttagaaa ataataaat 
tatttctgt ttgt

    If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
    Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY