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Gene information
General information
TC007186 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007419.2: 7879862..7881233
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC007186
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
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    Email
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    Publish name
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_01139

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 10.0% (includes death as pupa, adult)

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection


    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC007186 RA
      MKFLVLVTL VAAAFGKNL PNQNARISK MVTSHGYPL 
      ETYRVTTED GYILDLFRM PHGYQNKDQ HDSQKPAVL 
      LMHGFLSCC EDFVAGGPS QGLAFYLAD QGYDVYLGN 
      ARGSPYGQH HTNLDPHKD AAFWRFSFH EIGVADMAA 
      IIDKVVSIS QQNKIHYVG HMEGATVFY ILASQKQGY 
      NNKIEKMVS LGPIAYLKK SPHPILKKV AENYKSKSW 
      VIKNVGMST FNPSSELTS EAENQCTEY EQTEQICHN 
      DYFLFNGYN SKNFNETTI QHVIQRRPC DGSVRQVLH 
      LAQMKETGR FESYTYPEK TDAYKYDLA QVSAPVAIF 
      YTPEDAFSY VDDVETLAK ELPNVYKKE VKSEYTNNL 
      DFLYAENIY KFYKYVADS FQDDERKSS RNMLY
    CDS sequence
    • >TC007186 RA
      atgaaattc ttggtgttg gtcactctg gtcgcagcc 
      gcatttggg aaaaatctc ccaaatcaa aatgctaga 
      atctcaaaa atggtgacc agtcacggt taccccttg 
      gaaacctac agagttacc actgaagac ggctacatt 
      ctggacctg ttccgaatg cctcacggt taccaaaat 
      aaggaccaa cacgattcg caaaaaccg gccgttctt 
      ctaatgcat ggtttcctc tcctgttgt gaagacttc 
      gtcgcaggg gggccttcc caaggcctg gccttctac 
      ctggccgac caaggctac gatgtctac ttgggtaat 
      gccagaggc agtccttac ggccaacac cacacaaat 
      ttagaccca cataaagat gctgctttc tggagattt 
      agtttccat gaaattggg gttgccgat atggctgcg 
      attatcgat aaagtggtt tcgataagc caacaaaat 
      aaaattcac tatgttggt catatggag ggagccaca 
      gttttctat attttggca tcacaaaag cagggatac 
      aataacaaa atcgaaaaa atggtctcg ttgggccct 
      attgcctac ttgaagaaa tctcctcac ccgattctt 
      aagaaagtc gcagagaat tacaaatca aagagctgg 
      gttattaaa aacgttggg atgagtacc tttaaccca 
      tcgtctgaa ctaacaagc gaagcagag aatcaatgt 
      actgaatac gagcaaacg gaacaaatt tgtcacaat 
      gactatttt ctgttcaat ggctacaat tccaagaat 
      ttcaatgaa actaccatt caacacgta atccagcgc 
      cgtccgtgt gatggttcc gtccgccag gtcctacat 
      ttggcccaa atgaaggaa accggccgt tttgaaagc 
      tacacttac cccgaaaaa acagacgct tacaaatat 
      gatctcgcc caagtttcg gccccagtg gccattttc 
      tacacccct gaagacgct ttctcttac gtcgacgat 
      gtcgaaact ttggccaag gaattacca aatgtttac 
      aagaaagaa gtcaagagt gaatacacc aacaatctt 
      gacttcctc tacgccgag aacatttac aaattctac 
      aaatacgtt gctgatagc tttcaggac gacgaacgc 
      aaaagtagc agaaatatg ttgtattaa
    mRNA sequence
    • >TC007186 RA
      ggctaactc ctcacaatg aaattcttg gtgttggtc 
      actctggtc gcagccgca tttgggaaa aatctccca 
      aatcaaaat gctagaatc tcaaaaatg gtgaccagt 
      cacggttac cccttggaa acctacaga gttaccact 
      gaagacggc tacattctg gacctgttc cgaatgcct 
      cacggttac caaaataag gaccaacac gattcgcaa 
      aaaccggcc gttcttcta atgcatggt ttcctctcc 
      tgttgtgaa gacttcgtc gcagggggg ccttcccaa 
      ggcctggcc ttctacctg gccgaccaa ggctacgat 
      gtctacttg ggtaatgcc agaggcagt ccttacggc 
      caacaccac acaaattta gacccacat aaagatgct 
      gctttctgg agatttagt ttccatgaa attggggtt 
      gccgatatg gctgcgatt atcgataaa gtggtttcg 
      ataagccaa caaaataaa attcactat gttggtcat 
      atggaggga gccacagtt ttctatatt ttggcatca 
      caaaagcag ggatacaat aacaaaatc gaaaaaatg 
      gtctcgttg ggccctatt gcctacttg aagaaatct 
      cctcacccg attcttaag aaagtcgca gagaattac 
      aaatcaaag agctgggtt attaaaaac gttgggatg 
      agtaccttt aacccatcg tctgaacta acaagcgaa 
      gcagagaat caatgtact gaatacgag caaacggaa 
      caaatttgt cacaatgac tattttctg ttcaatggc 
      tacaattcc aagaatttc aatgaaact accattcaa 
      cacgtaatc cagcgccgt ccgtgtgat ggttccgtc 
      cgccaggtc ctacatttg gcccaaatg aaggaaacc 
      ggccgtttt gaaagctac acttacccc gaaaaaaca 
      gacgcttac aaatatgat ctcgcccaa gtttcggcc 
      ccagtggcc attttctac acccctgaa gacgctttc 
      tcttacgtc gacgatgtc gaaactttg gccaaggaa 
      ttaccaaat gtttacaag aaagaagtc aagagtgaa 
      tacaccaac aatcttgac ttcctctac gccgagaac 
      atttacaaa ttctacaaa tacgttgct gatagcttt 
      caggacgac gaacgcaaa agtagcaga aatatgttg 
      tattaaatc cgtgcaaaa ccaaaataa ataaaatta 
      tcacatcct g
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY