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Gene information
General information
TC006127 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007423.3: 2771875..2772792
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC006127
    iBeetle screen iB_00999

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)

    Fertility
    previtellogenic egg chamber not present - Number of animals showing the phenotype: 3

    vitellarium size decreased - Number of animals showing the phenotype: 4
    mature egg not present - Number of animals showing the phenotype: 4
    vitellogenic egg chamber degenerated - Number of animals showing the phenotype: 4

    previtellogenic egg chamber number decreased - Number of animals showing the phenotype: 1

    lateral oviduct degenerated - Number of animals showing the phenotype: 4
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC006127 RA
      MSESESSEK PKVQVKHDW YQTDAAVVI 
      TVLVKNVKE ENLSVNFAK TCVTAKIKF 
      PEQDDIELK FNLSHEVVP EQCSYKITP 
      SKIEVKLKK SEGIRWAKL EGPEDLPKA 
      IPVEVAQTS GPPAYPTSK KGKDWSVVE 
      KEIKEEEAK EKPEGEEAL NKLFQEIYG 
      KGSDEVKRA MNKSYMESG GTVLSTNWD 
      EISKEKVGV KPPDGMEWK KW
    CDS sequence
    • >TC006127 RA
      atgtccgaa agtgagtcc agtgagaag ccaaaagtg 
      caagtcaag cacgactgg taccaaacg gacgctgct 
      gtggtcata accgtgctt gtaaagaac gtcaaggag 
      gagaatttg agtgtaaac tttgccaaa acgtgtgtc 
      actgcgaaa attaaattc ccggaacag gacgatatt 
      gagctcaaa ttcaacctc tcgcatgag gtagtccct 
      gagcagtgt tcgtataaa atcaccccc tcgaagatt 
      gaggttaag ttgaaaaaa agtgaggga atcaggtgg 
      gccaagctg gaagggccg gaagacctc cctaaggcg 
      atacccgtg gaagtggcc cagacgagc ggccccccg 
      gcctacccc acctccaaa aagggcaaa gactggtcc 
      gttgtcgag aaggaaatc aaagaagag gaggcaaag 
      gaaaagccc gagggcgag gaggccctc aataagctg 
      ttccaggag atttacggc aaaggcagc gacgaggtc 
      aagcgggca atgaataag agttatatg gagagtggg 
      ggcacggtt cttagcacg aattgggac gagatatcg 
      aaggagaag gtcggggtg aagccaccg gatggcatg 
      gagtggaaa aagtggtag
    mRNA sequence
    • >TC006127 RA
      gatgtcgca cgtgcgtca cctgtcaaa tctttgttt 
      ttctagaag tttacaaat ttggggctt aattattgt 
      gttgccgaa acgtttaat tctatgtta gagtggtaa 
      aaaatgtcc gaaagtgag tccagtgag aagccaaaa 
      gtgcaagtc aagcacgac tggtaccaa acggacgct 
      gctgtggtc ataaccgtg cttgtaaag aacgtcaag 
      gaggagaat ttgagtgta aactttgcc aaaacgtgt 
      gtcactgcg aaaattaaa ttcccggaa caggacgat 
      attgagctc aaattcaac ctctcgcat gaggtagtc 
      cctgagcag tgttcgtat aaaatcacc ccctcgaag 
      attgaggtt aagttgaaa aaaagtgag ggaatcagg 
      tgggccaag ctggaaggg ccggaagac ctccctaag 
      gcgataccc gtggaagtg gcccagacg agcggcccc 
      ccggcctac cccacctcc aaaaagggc aaagactgg 
      tccgttgtc gagaaggaa atcaaagaa gaggaggca 
      aaggaaaag cccgagggc gaggaggcc ctcaataag 
      ctgttccag gagatttac ggcaaaggc agcgacgag 
      gtcaagcgg gcaatgaat aagagttat atggagagt 
      gggggcacg gttcttagc acgaattgg gacgagata 
      tcgaaggag aaggtcggg gtgaagcca ccggatggc 
      atggagtgg aaaaagtgg tagtttttg tatttaaat 
      aaattattg tcaaaggt
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY