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Gene information
General information
TC006058 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007423.3: 2380602..2381526
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
      TC006058
      iBeetle screen iB_00989

      Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

      iB sequence
      Phenotype after pupal injection
      Usually 10 injected animals

      Pupal injection procedure

      Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

      3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

      9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

      11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

      Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

      13 dpi: Egg productivity and Ovary analysis
      The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

      14 dpi: Analysis of embryonic musculature and early embryonic development
      Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

      15 dpi: Analysis of larval instar 1 cuticle
      Offspring of injected females were analysed and cuticle phenotypes were annotated.

      22 dpi: Stink gland analysis
      Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

      Terms used in the pupal injection procedure

      larval pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      empty eggs
      Just empty shells are visible, no cuticle has been developed.
      strong defects
      L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
      strongly fragmented (cuticle crumbs)
      No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
      cuticle remnants (with unidentifiable segments)
      Segments or parts of appendages are recognizable, but identity is not clear.
      cuticle remnants (with some identifiable segments)
      At least one segment or appendage is clearly regonizable.
      number of eggs on slide
      affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
      For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
      total number of affected eggs/embryos/larvae
      Summary of all different phenotypes/ phenotypic series which were annotated.
      inside-out
      The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      Please see the help page for more information
      Metamorphosis and survival

      Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)

      eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 3 (3 dpi)
      Days post injection


      Analysis of larval stage 1 cuticle
      number of eggs/embryos/larvae on slide: < 20
      Phenotype after larval injection
      Usually 10 injected animals

      Larval injection procedure

      Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

      11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

      16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

      19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

      22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

      41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

      Terms used in the larval injection procedure

      pupal/ adult pantagmatic defects
      At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
      pupal molt not fulfilled
      The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
      eclosion not fulfilled
      The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
      starved
      Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
      Metamorphosis and survival

      Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
      Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)

      RNAi sequence
      Primers
      Left: Right:
      Protein sequence
      • >TC006058 RA
        MATKIVLLT LLLLVSALA WETKVCSID 
        CSGSSGTTD SPSGTTSTP TTGGSDSSG 
        TPTSSDPDS GSTGSGCPC TCSPSTPVT 
        EPSSHSGSG SDSKSSESN ESDRILGHS 
        KHQKLGHGK SHPHAKHNK HESGKSNHQ 
        HAHDKENHQ GLDQLINHA KQFIPIGKN 
        NHKEHPNAK HAHENREHA HAHEKEHAH 
        AHEKEHAHA HDKHNVHEQ GKHNAHGKQ 
        YQHEKHEHN
      CDS sequence
      • >TC006058 RA
        atggcaacc aaaatcgtt cttctgaca cttttgctg 
        ctagtttcg gccctggct tgggaaaca aaagtctgt 
        agtatcgac tgttcgggc tcttccggt accaccgac 
        agcccttcg ggtaccacc tccaccccc accaccggg 
        ggttccgac agttctgga actcccact tccagtgac 
        ccagactcc ggaagcact ggctccggg tgcccgtgc 
        acctgcagc ccctctact ccggtgacg gaaccctcg 
        agccactcc gggtccgga tccgacagc aaatcgtcg 
        gaaagcaac gaaagtgac agaattttg ggacactcc 
        aaacaccaa aaactcgga catggtaag agccaccca 
        cacgccaaa cacaacaaa cacgaatcg ggcaaaagt 
        aaccatcaa cacgcccat gacaaggag aaccatcaa 
        gggttggac caactgatc aaccatgcg aaacagttc 
        attccaatt gggaaaaac aaccataaa gaacatcca 
        aatgcgaaa catgcgcat gagaacagg gaacatgcg 
        cacgcgcat gagaaggaa catgcgcac gcgcacgag 
        aaggaacat gcgcacgcg catgacaaa cataatgtt 
        cacgaacag gggaaacac aacgcgcat ggaaaacag 
        taccaacat gagaaacac gaacataac taa
      mRNA sequence
      • >TC006058 RA
        acagagaaa actcaatca atcggccca aaaatggca 
        accaaaatc gttcttctg acacttttg ctgctagtt 
        tcggccctg gcttgggaa acaaaagtc tgtagtatc 
        gactgttcg ggctcttcc ggtaccacc gacagccct 
        tcgggtacc acctccacc cccaccacc gggggttcc 
        gacagttct ggaactccc acttccagt gacccagac 
        tccggaagc actggctcc gggtgcccg tgcacctgc 
        agcccctct actccggtg acggaaccc tcgagccac 
        tccgggtcc ggatccgac agcaaatcg tcggaaagc 
        aacgaaagt gacagaatt ttgggacac tccaaacac 
        caaaaactc ggacatggt aagagccac ccacacgcc 
        aaacacaac aaacacgaa tcgggcaaa agtaaccat 
        caacacgcc catgacaag gagaaccat caagggttg 
        gaccaactg atcaaccat gcgaaacag ttcattcca 
        attgggaaa aacaaccat aaagaacat ccaaatgcg 
        aaacatgcg catgagaac agggaacat gcgcacgcg 
        catgagaag gaacatgcg cacgcgcac gagaaggaa 
        catgcgcac gcgcatgac aaacataat gttcacgaa 
        caggggaaa cacaacgcg catggaaaa cagtaccaa 
        catgagaaa cacgaacat aactaaatg atttgtgat 
        ccaatgtga aatttgagg ttgtgggat aataaaaaa 
        tacatagca gt
      The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY