Status
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Gene information
General information
TC006034 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007423.3: 2621995..2629352
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC006034
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
    We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
    Publish name
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_00982

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 40.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
    Days post injection

    Analysis of larval stage 1 cuticle
    number of eggs/embryos/larvae on slide: < 20
    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 40.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 40.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality - Number of animals showing the phenotype: 4 (11 dpi)
    Days post injection

    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC006034 RA
      MKCIVLLLL LAQAKTQLI SPCPRLFQY EPQGSENDR 
WYATVTLIS DAELSGVWL RLIFDKPSI QLGNWFGEV 
VTTDNKEYL IKNRNHKLA ANTPYKLRF YLKYNPGEK 
PPQLVMFRL NARLACPEN GVTTEAPVT TGQLITSSL 
LSTTRNPLA NSNSNNNNN NNQGTTFVK PGGAFNQQT 
TNSGDDDDF FHGDFAIFH RPKPSLDAG AACGTVVMP 
PRPLITHGQ ATHEGEFPW HAALYHATG IDLTYICGA 
SLITRYHLL TVAHCVTKP KSQEKLDPG SLVVYLGKY 
YLKRWSNPG IQDKHVDKI TVHPDYKSQ VFTNDIAIL 
RMASPVELT NYVRPVCLW DENTQLQAV INKAGTVVG 
WGFDENGRV TEQLTKAKM PVVSQETCI YSFPDFYSR 
FTSDKTYCA GFKNGTSVC NGDSGGGMV FPKSNSNLN 
NPTWQLRGL VSISVALQN QLKCDASHY VVFTDVAKY 
LDWIKASLN
    CDS sequence
    • >TC006034 RA
      atgaagtgt atcgtcttg ttgctgctc ctggcccaa 
gctaaaacc cagcttatc tccccctgc cccagactg 
ttccaatac gagccccag ggatcagaa aacgaccga 
tggtacgcc actgtcaca ctcataagc gatgcggaa 
ttatcaggg gtttggttg cgcttaatt ttcgacaaa 
ccctcaatt cagctcgga aactggttc ggcgaagtt 
gtgacaaca gacaacaag gaatattta atcaaaaat 
cgcaaccac aaactggcc gccaacaca ccgtacaaa 
ctccgattt tacctcaaa tacaacccg ggggaaaaa 
ccgccacag ttggtcatg tttcggcta aatgcgcgg 
ttggcgtgc cccgaaaat ggggtcacc accgaagcc 
cccgtcacg acgggacaa ctcattaca agtagtttg 
ctttcaacg acacgtaac ccgttggcg aatagtaac 
agtaacaat aataataac aacaatcaa gggactact 
ttcgtcaaa ccaggaggg gcttttaac caacaaacg 
acaaattcg ggcgatgat gacgatttt ttccacggg 
gattttgcc atttttcat cgcccgaaa ccctcactg 
gacgcgggg gctgcttgt ggcaccgtt gttatgccc 
ccacgtccg ctcataacc cacggacag gccacccac 
gagggcgag ttcccctgg catgcagcc ctctaccac 
gccactggc atcgacctg acctacatc tgtggggcc 
tcccttatc acccgttat cacctctta accgtagcc 
cactgtgtc accaaacct aaatctcag gaaaaactc 
gatcctggc agtttagta gtttattta gggaaatac 
tatttgaaa agatggtca aatccaggg attcaagac 
aaacacgtc gacaaaatc acagtccat cccgattac 
aaatcgcaa gttttcaca aacgatatt gcaatcctt 
cggatggct tcgcctgta gaactcact aattatgtc 
cgaccggtg tgtctttgg gacgaaaat acgcaattg 
caggctgtt attaacaaa gctggaacg gtggtgggc 
tggggtttt gacgaaaac ggccgagtg accgagcag 
ctgaccaag gccaaaatg ccggtcgtg tcgcaagaa 
acgtgcatt tactcgttc cctgatttc tactcgcgt 
ttcacttcg gacaaaacc tactgtgct ggatttaaa 
aatggtact tcagtgtgc aatggggac tcggggggc 
ggtatggtg ttccccaaa tcaaactcg aatttgaat 
aatccgacg tggcaattg aggggcctt gtctcgata 
agtgtggcc ttgcaaaac caactcaaa tgtgatgcc 
tcgcattat gttgttttc acagatgtg gcgaagtat 
ctcgactgg attaaagcc tcgcttaat taa
    mRNA sequence
    • >TC006034 RA
      attggtgcg cttggattt ttgaaaatt gttaaaata 
aaacttttt ttctttaac attccttgt ttgtcttcc 
aaacccaca aataacaca taaatattt aaattgcgg 
cgccaaatt caaaaagaa gacgattta actgtactt 
taagtgacc gttattgac ccatgacca tcaccaacg 
gggattcct accttgtcc ttgactgca accattaaa 
ttcacgcaa aacaggttt caagatttt accactgtc 
ataacaaac gcagataag atccaaact taagccctg 
atgctcctc gtgcctccc agaaaatga acgtagtga 
ttaaacgat aaaaaacgg tgtgttttt agtgttggc 
tatcgtcca gaaagtaag ttttttcaa tcagcaaaa 
cgccttgat atttaccaa acgagttat tttcgaaaa 
aacactgca ccaagtaag tcgaagaac aaaaaacga 
atttcaaaa gaatgaata atcgctaaa aatatttac 
tacaaaaac acgcaaagg aatccgcca acgttacca 
tgaagtgta tcgtcttgt tgctgctcc tggcccaag 
ctaaaaccc agcttatct ccccctgcc ccagactgt 
tccaatacg agccccagg gatcagaaa acgaccgat 
ggtacgcca ctgtcacac tcataagcg atgcggaat 
tatcagggg tttggttgc gcttaattt tcgacaaac 
cctcaattc agctcggaa actggttcg gcgaagttg 
tgacaacag acaacaagg aatatttaa tcaaaaatc 
gcaaccaca aactggccg ccaacacac cgtacaaac 
tccgatttt acctcaaat acaacccgg gggaaaaac 
cgccacagt tggtcatgt ttcggctaa atgcgcggt 
tggcgtgcc ccgaaaatg gggtcacca ccgaagccc 
ccgtcacga cgggacaac tcattacaa gtagtttgc 
tttcaacga cacgtaacc cgttggcga atagtaaca 
gtaacaata ataataaca acaatcaag ggactactt 
tcgtcaaac caggagggg cttttaacc aacaaacga 
caaattcgg gcgatgatg acgattttt tccacgggg 
attttgcca tttttcatc gcccgaaac cctcactgg 
acgcggggg ctgcttgtg gcaccgttg ttatgcccc 
cacgtccgc tcataaccc acggacagg ccacccacg 
agggcgagt tcccctggc atgcagccc tctaccacg 
ccactggca tcgacctga cctacatct gtggggcct 
cccttatca cccgttatc acctcttaa ccgtagccc 
actgtgtca ccaaaccta aatctcagg aaaaactcg 
atcctggca gtttagtag tttatttag ggaaatact 
atttgaaaa gatggtcaa atccaggga ttcaagaca 
aacacgtcg acaaaatca cagtccatc ccgattaca 
aatcgcaag ttttcacaa acgatattg caatccttc 
ggatggctt cgcctgtag aactcacta attatgtcc 
gaccggtgt gtctttggg acgaaaata cgcaattgc 
aggctgtta ttaacaaag ctggaacgg tggtgggct 
ggggttttg acgaaaacg gccgagtga ccgagcagc 
tgaccaagg ccaaaatgc cggtcgtgt cgcaagaaa 
cgtgcattt actcgttcc ctgatttct actcgcgtt 
tcacttcgg acaaaacct actgtgctg gatttaaaa 
atggtactt cagtgtgca atggggact cggggggcg 
gtatggtgt tccccaaat caaactcga atttgaata 
atccgacgt ggcaattga ggggccttg tctcgataa 
gtgtggcct tgcaaaacc aactcaaat gtgatgcct 
cgcattatg ttgttttca cagatgtgg cgaagtatc 
tcgactgga ttaaagcct cgcttaatt aaatgaatt 
atgttttta tatggtgat aaataaaca c

    If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
    Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.

    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY