General information | |||
TC005758 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007423.3: 8206832..8210269 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC005758 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_00921 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 30.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)
eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 7 (16 dpi)
metathoracic leg tarsus structure irregular - Number of animals showing the phenotype: 6
- >TC005758 RA
MPKFDKKRT RNRFNPSFR GKTNRPQVH REYQHQNQL REIDVGITE FINTFEGFS GVIKARFSD FQVNEIDPD GQIAKLTNL EIPKFGTTV EKADAPADS PLSQIPQET WLGLKQMLD EAEPPLIEL DVSEMTKED RTEIHKSLK KYFGGKISA NTETKNDKK FMVFKKHDG KIDNRSNWP SDKGEFVHF LVYKECLDT LDTALRIAS CLKMPPAHF SYAGVKDRR AKTTQWFSV KRVEPWKLM VKTRPIRNV KIGNITFKD KPLKLGDLT GNKFRIALR NVTGDDDLI EKSLKSLQD KGFVNYYGL QRFGNDKEV PTFSVGIQL LLGNWKEAC DIILKLTKS DQPDLDVSK AKKVYAETG DPEKALAQF ESKNSCIEY LLLSGLSKE HKNDYVNAL ASIPRNTRL LYIHSFQSL VWNLIASKR IEKYGLKVV PGDLILLEN LKENSEDDE DCGENKKEP VKELTDEEC ANYTIYDIV LPLPGYDIT YPENMKDCY KEILEKYGL TLEMTRQKV RTYTLSGTY RKLMGQVQN LSWKIMYYN DPNDNLIRS DLEELKGEK EPASVEGGK YKALLLDFC LDSSSYATM VLREILKSD TSSSSHAKL NNYHVATAK PEEKTCEEN EFSDKVGLL NDSQKYEAF KNIVFSEDD TSLKRKCEE ENGEKAKVA KT
- >TC005758 RA
atgccaaaa ttcgacaaa aaacgcacc agaaaccgc ttcaatccc agctttagg ggaaaaacc aaccgaccg caagtccac cgcgaatac cagcaccaa aatcaattg cgcgaaatc gatgtggga attaccgaa ttcattaac acgtttgag ggtttctct ggcgtgatc aaagcccgc ttttcggat tttcaagtc aatgaaatc gaccccgac ggccaaatt gccaaacta acaaacttg gaaatcccc aagtttggg acaaccgtg gaaaaagcc gatgcaccg gctgatagc cccttgtcc caaatcccg caggagaca tggctaggt ttaaagcaa atgcttgac gaggcggag ccgcctttg atcgaactc gacgtcagt gaaatgaca aaagaggat cgtacggaa attcacaaa tcgttgaaa aagtacttt ggagggaaa attagtgca aatactgag acgaaaaac gataagaaa tttatggtt tttaaaaaa cacgacggt aaaattgac aaccgctcg aactggccg agtgataaa ggggagttt gtccatttc cttgtgtat aaggaatgt ctcgacacg ttagacacc gccttaagg atcgcctca tgtttaaaa atgcccccc gcacatttt agttatgcc ggggttaag gaccgaaga gcgaaaacc actcaatgg ttttcggtc aaaagagtc gaaccgtgg aaactgatg gtaaaaacg cgaccaatt cgaaacgta aagattggt aatatcact ttcaaagac aagccgtta aaactaggc gacttgacc ggtaataaa ttccgaatc gcgctcaga aatgtgact ggggacgac gatttgatc gaaaagtcg ctcaaaagt ctccaagac aaggggttt gttaattat tacgggtta caaaggttt gggaacgat aaagaagtg cccacgttt tcggtcggg atacaactt ttgttgggc aattggaaa gaggcctgt gatattatt ttgaaacta acaaagtca gaccagccc gatttggac gtctctaaa gctaagaaa gtatacgct gagacgggc gaccctgaa aaggcttta gctcaattc gagagcaaa aattcttgt atcgaatat ttattattg tcaggactg agcaaagaa cataaaaat gactacgtc aatgcttta gcgagtata ccgcgaaat acgagactc ctttacatt cactcgttc caaagtttg gtttggaat ttaattgcg tcaaaacga attgaaaaa tacggcctt aaggtcgtc ccaggcgac ttgattctt ctcgaaaat ttaaaagaa aactcggaa gatgacgag gattgtggc gaaaataaa aaagagccc gtgaaagaa ctaaccgat gaagagtgc gccaattat acaatttat gacattgtt ttaccactg ccgggttac gacattaca tatccggaa aatatgaaa gactgttac aaggaaatt ttagaaaaa tacggccta actttagaa atgacgaga caaaaagta cgcacttat acgttaagt ggaacttat cgtaaatta atggggcaa gtgcagaac ctgtcgtgg aaaataatg tactataac gaccccaac gataattta attaggtca gatttggaa gaactgaaa ggggagaaa gaacccgcg agtgttgaa ggaggaaaa tacaaagcg ctgctgcta gatttttgc ctcgactca tcttcatat gccacaatg gtgttacgc gaaattcta aaaagcgat acttcgagt agctcccac gcgaaatta aataattac catgtggca acagcaaaa cctgaggaa aaaacgtgt gaggaaaat gagttttcg gataaagtt ggattactc aacgactca caaaagtac gaagctttc aaaaatata gtcttcagt gaagacgat acaagtttg aaacgaaag tgtgaggag gagaatggg gaaaaggca aaggtcgcg aaaacgtaa
- >TC005758 RA
taaacgtaa ccacaacca cataacctc tcatttttt gactgtcac tttgacagt tgtggcggt ggttaaaca cgtgtgata aaaaatgcc aaaattcga caaaaaacg caccagaaa ccgcttcaa tcccagctt taggggaaa aaccaaccg accgcaagt ccaccgcga ataccagca ccaaaatca attgcgcga aatcgatgt gggaattac cgaattcat taacacgtt tgagggttt ctctggcgt gatcaaagc ccgcttttc ggattttca agtcaatga aatcgaccc cgacggcca aattgccaa actaacaaa cttggaaat ccccaagtt tgggacaac cgtggaaaa agccgatgc accggctga tagcccctt gtcccaaat cccgcagga gacatggct aggtttaaa gcaaatgct tgacgaggc ggagccgcc tttgatcga actcgacgt cagtgaaat gacaaaaga ggatcgtac ggaaattca caaatcgtt gaaaaagta ctttggagg gaaaattag tgcaaatac tgagacgaa aaacgataa gaaatttat ggtttttaa aaaacacga cggtaaaat tgacaaccg ctcgaactg gccgagtga taaagggga gtttgtcca tttccttgt gtataagga atgtctcga cacgttaga caccgcctt aaggatcgc ctcatgttt aaaaatgcc ccccgcaca ttttagtta tgccggggt taaggaccg aagagcgaa aaccactca atggttttc ggtcaaaag agtcgaacc gtggaaact gatggtaaa aacgcgacc aattcgaaa cgtaaagat tggtaatat cactttcaa agacaagcc gttaaaact aggcgactt gaccggtaa taaattccg aatcgcgct cagaaatgt gactgggga cgacgattt gatcgaaaa gtcgctcaa aagtctcca agacaaggg gtttgttaa ttattacgg gttacaaag gtttgggaa cgataaaga agtgcccac gttttcggt cgggataca acttttgtt gggcaattg gaaagaggc ctgtgatat tattttgaa actaacaaa gtcagacca gcccgattt ggacgtctc taaagctaa gaaagtata cgctgagac gggcgaccc tgaaaaggc tttagctca attcgagag caaaaattc ttgtatcga atatttatt attgtcagg actgagcaa agaacataa aaatgacta cgtcaatgc tttagcgag tataccgcg aaatacgag actccttta cattcactc gttccaaag tttggtttg gaatttaat tgcgtcaaa acgaattga aaaatacgg ccttaaggt cgtcccagg cgacttgat tcttctcga aaatttaaa agaaaactc ggaagatga cgaggattg tggcgaaaa taaaaaaga gcccgtgaa agaactaac cgatgaaga gtgcgccaa ttatacaat ttatgacat tgttttacc actgccggg ttacgacat tacatatcc ggaaaatat gaaagactg ttacaagga aattttaga aaaatacgg cctaacttt agaaatgac gagacaaaa agtacgcac ttatacgtt aagtggaac ttatcgtaa attaatggg gcaagtgca gaacctgtc gtggaaaat aatgtacta taacgaccc caacgataa tttaattag gtcagattt ggaagaact gaaagggga gaaagaacc cgcgagtgt tgaaggagg aaaatacaa agcgctgct gctagattt ttgcctcga ctcatcttc atatgccac aatggtgtt acgcgaaat tctaaaaag cgatacttc gagtagctc ccacgcgaa attaaataa ttaccatgt ggcaacagc aaaacctga ggaaaaaac gtgtgagga aaatgagtt ttcggataa agttggatt actcaacga ctcacaaaa gtacgaagc tttcaaaaa tatagtctt cagtgaaga cgatacaag tttgaaacg aaagtgtga ggaggagaa tggggaaaa ggcaaaggt cgcgaaaac gtaactaca ggaaacttt tttatcggc ttgaaataa aaacactt
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
