Status
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Gene information
General information
TC005532 Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NC_007423.3: 11693463..11694519
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    TC005532
    Gene ontology

    GO terms for Tribolium

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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes


    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
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    The Tribolium gene the GO term is assigned to.
    GO ID *
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    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
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    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
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    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
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    Name
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    Email
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    Publish name
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_00877

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)

    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 10.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 20.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality early (L5/6) - Number of animals showing the phenotype: 1 (11 dpi)
    Days post injection


    adult lethality - Number of animals showing the phenotype: 1 (19 dpi)
    Days post injection


    Fertility
    egg production: number <50% of expected -
    ovary without detectable defects - Number of animals showing the phenotype: 4
    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC005532 RA
      MLRAVVVIL TLAQVVQSE LLFEQGFLK FVRHGKRQL 
      YTNVERIDE KLIGKDRHL VVVRAKWME VVHARSVAN 
      LKSLRELFM AKCGIVTIE AGAFFNLPN LSVLHLEDN 
      ALQEVKNGV FSGLSVKIL TLHRNEIKR IESGAFDQM 
      PNLYKIKLN SNRLKKWDS SWFKNCPQL TELFVRRNK 
      INHLPPEAF RNLQSPEVK IYLSKNKLG AINPESFHN 
      LVALSQLYL DRNNLTLIP VNAFRDLRK IDVLYLARN 
      KIQEVNPGA LPKIVEIGI LDLSSNLLN CLDYGLVVK 
      ANVTNLEKN EGACECIKN LALKLEQET KEQEVQFDG 
      DTCPDLVQ
    CDS sequence
    • >TC005532 RA
      atgttgcga gctgttgtg gtcatcctc acactcgcc 
      caagtcgtg caaagtgag ttgttgttc gagcaaggt 
      ttcctcaag tttgtgcga catggaaaa cgccaactc 
      tacaccaac gtggaacgc atcgacgaa aaactgatc 
      ggaaaagac cggcatttg gtggtcgtg cgggcgaaa 
      tggatggaa gttgtccat gccagatcg gtggccaat 
      ttaaagagc ttgagggag ttgtttatg gccaagtgc 
      gggattgtg accatcgaa gctggggct ttcttcaat 
      ttgcccaac ttgtctgtg cttcatttg gaagataac 
      gcccttcag gaggtcaag aatggggtt ttcagcggc 
      ctgagtgtg aagatcctg actctgcat cgcaacgag 
      atcaagaga attgaaagt ggggctttt gaccaaatg 
      cccaacttg tacaaaatc aagctgaac tcgaaccgc 
      ctcaaaaag tgggactcg agctggttc aaaaactgc 
      ccacaattg accgaactc ttcgtccga cgcaacaaa 
      atcaatcac ttgccccca gaagccttc agaaatttg 
      caatcaccg gaggttaaa atctacctc agtaagaac 
      aaactaggg gcaattaac cccgaaagt ttccacaat 
      ttggtggct ttgagccag ttataccta gacaggaac 
      aacttaact ttaatccca gttaacgcc tttcgtgac 
      ttgcgaaaa atcgatgta ttgtactta gcccggaac 
      aaaatccag gaagtgaat cctggagct ttaccaaaa 
      attgtcgaa attggaatc ctggacctg tccagcaat 
      ttattgaat tgtctcgat tatggtctt gttgttaag 
      gcaaatgtg accaatttg gagaagaac gaaggcgcc 
      tgtgagtgc attaaaaat ttggccctt aaactggag 
      caggaaacg aaggaacag gaggtgcag tttgatgga 
      gacacgtgt ccagacttg gtgcaataa
    mRNA sequence
    • >TC005532 RA
      cgcaaataa tgttgcgag ctgttgtgg tcatcctca 
      cactcgccc aagtcgtgc aaagtgagt tgttgttcg 
      agcaaggtt tcctcaagt ttgtgcgac atggaaaac 
      gccaactct acaccaacg tggaacgca tcgacgaaa 
      aactgatcg gaaaagacc ggcatttgg tggtcgtgc 
      gggcgaaat ggatggaag ttgtccatg ccagatcgg 
      tggccaatt taaagagct tgagggagt tgtttatgg 
      ccaagtgcg ggattgtga ccatcgaag ctggggctt 
      tcttcaatt tgcccaact tgtctgtgc ttcatttgg 
      aagataacg cccttcagg aggtcaaga atggggttt 
      tcagcggcc tgagtgtga agatcctga ctctgcatc 
      gcaacgaga tcaagagaa ttgaaagtg gggcttttg 
      accaaatgc ccaacttgt acaaaatca agctgaact 
      cgaaccgcc tcaaaaagt gggactcga gctggttca 
      aaaactgcc cacaattga ccgaactct tcgtccgac 
      gcaacaaaa tcaatcact tgcccccag aagccttca 
      gaaatttgc aatcaccgg aggttaaaa tctacctca 
      gtaagaaca aactagggg caattaacc ccgaaagtt 
      tccacaatt tggtggctt tgagccagt tatacctag 
      acaggaaca acttaactt taatcccag ttaacgcct 
      ttcgtgact tgcgaaaaa tcgatgtat tgtacttag 
      cccggaaca aaatccagg aagtgaatc ctggagctt 
      taccaaaaa ttgtcgaaa ttggaatcc tggacctgt 
      ccagcaatt tattgaatt gtctcgatt atggtcttg 
      ttgttaagg caaatgtga ccaatttgg agaagaacg 
      aaggcgcct gtgagtgca ttaaaaatt tggccctta 
      aactggagc aggaaacga aggaacagg aggtgcagt 
      ttgatggag acacgtgtc cagacttgg tgcaataat 
      tcagtattt tgttgtgtt ttttattaa taaataaag 
      taatcaatc aaat
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY