| General information | |||
| TC005099 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007423.3: 1695667..1708737 | |
| Sequence information | |||
| Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
||
| Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
| Closest fly homologs |
|
TC005099 | |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
| General information | ||||
| iB_00804 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
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Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 50.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 2 (3 dpi)adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
adult lethality - Number of animals showing the phenotype: 2 (11 dpi)
adult nutritional state bad (cachectic) - Number of animals showing the phenotype: 4 (11 dpi)
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 30.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)
pupal molt delayed (still larva) - Number of animals showing the phenotype: 7 (11 dpi)
larva lethality late (L7) - Number of animals showing the phenotype: 7 (16 dpi)
- >TC005099 RA
MADSNSLLE DGQSLQDMM NDGVGLTYN DFIILPGYI DFTPDAVDL TTQLTKKIT LKSPLVSSP MDTVTESSM AIAMALCGG IGVIHHNCS PSYQANEVL KVKKYKHGF IHNPVVLCP TNTVADVLK TKKEQGFSG IPITEDGKM GGKLVGIVT SRDLDFLED QNYSNSKLE TIMTKLEDL VTAQSGVTL PEANSILAK SKKGKLPIV NAEGNLVAL MARTDLKKA KSYPTASKD DNKQLIVGA AIGTRDEDK ERLKLLVNA GVDVIVLDS SQGNSVYQI EMIKYIKKS YPSLQVIAG NVVTAKQAK NLIDAGADA LRCGMGSGS ICITQEVMA VGRAQATAV YRVAQYAKR YGVPVIADG GIQSIGHII KALALGASS VMMGSMLAG TSEAPGEYY FSDGVRLKK YRGMGSIEA MNRKDAMGS AMNRYFHSD ADKLKVAQG VSGSIVDKG SVFRFVPYL QCGIRHGCQ DIGVKSLTK LKELIDCGE VRFEKRTHS AQLEGNVHG LFSYEKRLF
- >TC005099 RA
atggctgac agcaacagt ttgcttgaa gatggccaa tcactccaa gacatgatg aacgatggc gttggactc acttacaat gactttata atcctccca ggatatatc gattttaca ccggacgca gttgacttg acgacccaa ttgaccaaa aaaataacg ctcaaatcg ccgcttgtt tcgtctccg atggacact gtgacagaa tcgtcaatg gcgattgca atggcgctt tgtggtggg attggggtg attcatcac aattgctcc ccctcgtat caagccaac gaagtactt aaagtaaaa aaatacaaa cacggattt attcataat ccggtcgtt ttgtgtccg acaaatacg gttgctgat gtgctcaaa actaagaag gaacaaggt ttttcgggc attccgatc actgaagat ggaaaaatg ggcggaaag cttgttgga attgtgacg tcgagagat cttgatttt cttgaagat caaaattac tcaaactct aaactcgaa actataatg accaaacta gaagatctc gtaacggct cagtctgga gtgaccctt cccgaagcc aactcaatc cttgccaaa agcaaaaag ggcaaactc ccaatcgta aacgccgaa ggcaacctc gttgcctta atggcccga accgatttg aaaaaagcg aaaagctac cccacagca tctaaagac gataataaa caattgatc gtcggagca gctattgga acacgcgac gaagacaaa gaacgactg aaactccta gtcaatgcc ggagttgac gttattgtt ctcgattcc tcgcaagga aattcagtt tatcaaata gaaatgatc aaatatatt aaaaaatcg tatccgagc ctgcaagtg attgctggg aatgtggta accgccaaa caggcgaag aatttaata gatgctggt gccgatgcg ctacgttgt ggcatgggg agtgggagt atttgcata acgcaggag gtgatggcc gttgggagg gcacaagct acagcggtc tacagggtg gcgcagtat gcgaagaga tacggagtg cctgttatt gcagatggg gggattcaa tcgattggg cacataatc aaggctttg gcattgggg gcatcttct gtgatgatg gggtcgatg ctggccggt acctccgaa gcacccggc gaatattac ttttctgat ggtgtaaga ttaaaaaaa tataggggt atgggcagt attgaagca atgaaccgg aaagatgcc atgggttct gccatgaac agatacttc cacagcgat gccgacaaa ctaaaagtg gctcaaggt gttagtgga agtattgta gacaaggga tctgttttc cgcttcgtt ccatatttg caatgtgga attagacac ggctgtcaa gatatagga gtcaaatct ctgactaag cttaaagaa ttgatcgat tgtggggag gttcgattt gagaagaga acacattcg gcgcaattg gaaggaaac gttcatggt ttattctcg tacgagaaa agattgttt tag
- >TC005099 RA
gttctttta cctctaaca gcttctgtg attggacgg ttatcgctc caagtccgg aatcctccc ttctgctcg atatttcac cgatataat caatagtag tccaaatgg ctgacagca acagtttgc ttgaagatg gccaatcac tccaagaca tgatgaacg atggcgttg gactcactt acaatgact ttataatcc tcccaggat atatcgatt ttacaccgg acgcagttg acttgacga cccaattga ccaaaaaaa taacgctca aatcgccgc ttgtttcgt ctccgatgg acactgtga cagaatcgt caatggcga ttgcaatgg cgctttgtg gtgggattg gggtgattc atcacaatt gctccccct cgtatcaag ccaacgaag tacttaaag taaaaaaat acaaacacg gatttattc ataatccgg tcgttttgt gtccgacaa atacggttg ctgatgtgc tcaaaacta agaaggaac aaggttttt cgggcattc cgatcactg aagatggaa aaatgggcg gaaagcttg ttggaattg tgacgtcga gagatcttg attttcttg aagatcaaa attactcaa actctaaac tcgaaacta taatgacca aactagaag atctcgtaa cggctcagt ctggagtga cccttcccg aagccaact caatccttg ccaaaagca aaaagggca aactcccaa tcgtaaacg ccgaaggca acctcgttg ccttaatgg cccgaaccg atttgaaaa aagcgaaaa gctacccca cagcatcta aagacgata ataaacaat tgatcgtcg gagcagcta ttggaacac gcgacgaag acaaagaac gactgaaac tcctagtca atgccggag ttgacgtta ttgttctcg attcctcgc aaggaaatt cagtttatc aaatagaaa tgatcaaat atattaaaa aatcgtatc cgagcctgc aagtgattg ctgggaatg tggtaaccg ccaaacagg cgaagaatt taatagatg ctggtgccg atgcgctac gttgtggca tggggagtg ggagtattt gcataacgc aggaggtga tggccgttg ggagggcac aagctacag cggtctaca gggtggcgc agtatgcga agagatacg gagtgcctg ttattgcag atgggggga ttcaatcga ttgggcaca taatcaagg ctttggcat tgggggcat cttctgtga tgatggggt cgatgctgg ccggtacct ccgaagcac ccggcgaat attactttt ctgatggtg taagattaa aaaaatata ggggtatgg gcagtattg aagcaatga accggaaag atgccatgg gttctgcca tgaacagat acttccaca gcgatgccg acaaactaa aagtggctc aaggtgtta gtggaagta ttgtagaca agggatctg ttttccgct tcgttccat atttgcaat gtggaatta gacacggct gtcaagata taggagtca aatctctga ctaagctta aagaattga tcgattgtg gggaggttc gatttgaga agagaacac attcggcgc aattggaag gaaacgttc atggtttat tctcgtacg agaaaagat tgttttagc aagagtgcg gtgggaatt aagttgtaa ataaatact tatgtgata taggtacga tcggtgtcg cattttctg atatttgta aatattgtg tatttccaa caatttgcg tttacactt ttaaacaat catttttgt tgtgaaagt attatggaa attttaata caatagaag catatttat ttaagacta tatatttat aagtgtacc tatattttt tatattagt tatgtttta ttaaaaaat tatgaaaat g
