General information | |||
TC003642 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007418.3: 10268953..10274969 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC003642 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_00596 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 0.0% (includes death as pupa, adult)
embryo/egg not developed/not fertilized - Penetrance (percentage of animals/eggs on slide): less than 30%
affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): more than 80%
egg without cuticle embryo/egg without visible larval cuticle in cuticle preparation - Penetrance (percentage of animals/eggs on slide): more than 80%
affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): more than 80%
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 30.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 40.0% (includes death as larva, prepupa, pupa, adult)
adult lethality - Number of animals showing the phenotype: 1 (19 dpi)
- >TC003642 RA
MLGRQKLKY EAVDSDDEP PSDFEEKKR GFFNNNCFW SSLFTSVLI GTYYIPSIC LTFYQRWLF QTFHFPLVT VLVHMIVKF LLAALIRAV LERRQGKQR VMLEWREYL VAVAPMGVF SGLDIGFSN WGLELIKVS LYTMTKSTT VVFILGFSM LFKLEKKSW SLALIVGMI TTGLILFTY KATQFDTLG FLLLLLASM SSGVRWTCV QLLLQKSKI GMRNPIDMI YHMQPWMII SVLPFAIWM EGPSVVKNC QLIRTTDTS IIITMIFKI LLGAFIAFF MEVCEVLVV GYTSSLTLS IAGVVKEVF ILVLAVEWN GDQLSPINV VGLLICLSG ITCHVFHKL RNTPKVARV YEVHDERRE LGEHLIVSE DGHVSSDND EKNDTQVLF DILRNRDR
- >TC003642 RA
atgttgggc cgtcaaaaa ttaaaatac gaagctgtg gacagcgac gatgagccc ccgagtgat ttcgaggaa aagaaacgt ggttttttc aacaataat tgcttttgg tccagttta tttacaagt gttttgatt ggaacttac tacattcct tccatatgt ttgacgttc tatcagcga tggcttttc cagacattc cattttccg ttagtcacg gttttggtt catatgatt gtcaaattt ctactagct gcgctaatc agggctgtg ttggagcga agacagggc aaacaaagg gttatgttg gagtggagg gagtatctg gtcgcagtg gcccccatg ggggtcttc agtggccta gacataggc ttctctaat tggggctta gaactcatt aaagtctca ttatataca atgaccaag tccacgaca gttgtgttt attttggga ttttcgatg ctatttaag cttgaaaaa aagtcatgg agtcttgcc cttatcgtt gggatgatc acaacggga ttaatcctc tttacttac aaagcgacc caatttgac actttgggc tttttgttg cttttattg gcctcgatg tctagtgga gtgagatgg acttgcgtc caactcctc ctccagaag tccaaaatc gggatgaga aaccccatc gatatgatc taccacatg cagccgtgg atgatcatc tcagtccta ccatttgcc atatggatg gaaggcccc tcagttgta aaaaattgc caactgata cgcaccaca gacacctca ataataatc acaatgatt ttcaaaatt ttactcggg gcctttatc gcatttttc atggaagtg tgcgaagtc ctagtggtg ggctacacc tcaagtctc acgctctcc atcgctgga gttgttaaa gaagtgttt atcctagtc ttagccgta gaatggaac ggggaccaa ctatcgccc atcaacgtt gttggcttg cttatttgt ctctctgga atcacgtgc catgttttc cacaagttg aggaacact ccgaaggtg gcacgtgtg tatgaggtg cacgacgag cgacgcgag ctgggtgag catttaata gtcagtgaa gatggacac gtgtcgagt gataacgac gagaagaac gacacgcaa gtactgttc gatattttg cgcaatcgg gacaggtag
- >TC003642 RA
tcaaacgtc actcggtcc tgtcaactt gtcacaaaa cagaaaaaa agtgaaata aaccaaaaa aagtgcatt tattccacg tctacggaa aatgtgacc ttatcatgg attttccgc gccacgaaa ccttatctt cgcccacaa accacagta aaatcccta tcaacatgt aaacaagat gttgggccg tcaaaaatt aaaatacga agctgtgga cagcgacga tgagccccc gagtgattt cgaggaaaa gaaacgtgg ttttttcaa caataattg cttttggtc cagtttatt tacaagtgt tttgattgg aacttacta cattccttc catatgttt gacgttcta tcagcgatg gcttttcca gacattcca ttttccgtt agtcacggt tttggttca tatgattgt caaatttct actagctgc gctaatcag ggctgtgtt ggagcgaag acagggcaa acaaagggt tatgttgga gtggaggga gtatctggt cgcagtggc ccccatggg ggtcttcag tggcctaga cataggctt ctctaattg gggcttaga actcattaa agtctcatt atatacaat gaccaagtc cacgacagt tgtgtttat tttgggatt ttcgatgct atttaagct tgaaaaaaa gtcatggag tcttgccct tatcgttgg gatgatcac aacgggatt aatcctctt tacttacaa agcgaccca atttgacac tttgggctt tttgttgct tttattggc ctcgatgtc tagtggagt gagatggac ttgcgtcca actcctcct ccagaagtc caaaatcgg gatgagaaa ccccatcga tatgatcta ccacatgca gccgtggat gatcatctc agtcctacc atttgccat atggatgga aggcccctc agttgtaaa aaattgcca actgatacg caccacaga cacctcaat aataatcac aatgatttt caaaatttt actcggggc ctttatcgc atttttcat ggaagtgtg cgaagtcct agtggtggg ctacacctc aagtctcac gctctccat cgctggagt tgttaaaga agtgtttat cctagtctt agccgtaga atggaacgg ggaccaact atcgcccat caacgttgt tggcttgct tatttgtct ctctggaat cacgtgcca tgttttcca caagttgag gaacactcc gaaggtggc acgtgtgta tgaggtgca cgacgagcg acgcgagct gggtgagca tttaatagt cagtgaaga tggacacgt gtcgagtga taacgacga gaagaacga cacgcaagt actgttcga tattttgcg caatcggga caggtagtc gcgagtttt cttcatgac tggatagta cttaaggaa atgtgggtg tgagtcacc cagattttt taatttaat acttttata acaacataa gattatgtt ttgtgatat tgtgtaatt taaggctaa gtgtatgtg tgacaatgt gattgtttt ttattgagt gaggggtaa ggttgcgat gtcgctaaa gttacgtct ttttttaat tattcttct actggacga ttttaaaag ccggtaata aaattttcg aatctccct taaaaaaaa tttcttgtc cattttggt gaaactttg gacaatttt aaggaagtt ttgagctcc acctgtgta aaatgttcc gaggagttg ataaaatta gacatttta cgagttatg aatggattt aactttaac acaagtgca ttagctcat actccaaac atgcactat tatccgaac acttcataa taattattt tttcaaaaa ttgaatata ctttgaata gacttatac tgtatattt tgttataca tgaagtact agcgagttt ataaaataa atctttaaa tagtgaaat atttaaggt agtacttta ataagcatt tacttttta ttactacta attactagt aattttcgt actcaagtc ttaatagct gttagctat tcggccgtt attatatat atttttttg aaaatggct taattttta aatatcaac ttaatgtca aacgctcaa ggcaatcta atagttgct gccatgtta cactcattg gtcacaagt tgtcctcat ggtcaccac actgcattc ccattggtc acaagcctg ataatcaaa aatctgtat ggtaaaaaa ttttcatta aagtacaga ttacagaca ttttatcaa ccaaataaa gcatgggag tagaa
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
