General information | |||
TC003567 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007418.3: 7606719..7609855 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs | TC003567 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_00586 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 50.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 3 (3 dpi)adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): more than 80%
remarks: muscle pattern potentially obscured by segmentation defect,
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: % (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: % (includes death as larva, prepupa, pupa, adult)
- >TC003567 RA
MVRYAELKG LYEIEKTIG CGGFAKVKL ATHVATGEK VAVKIMNKT GLGDDLPRV KLELKALKS FSHQHICKL YQVIESETH FFIVIEYCS GGELFDHIV EKNRLSESE SRTFFRQIV SGVAYLHSL GYAHRDLKP ENVLLDKDQ NLKLIDFGL CARPEGGMG SPLYTSCGS PTYAAPELV LGKKYLGPE VDVWAMGVL LYALLVGAL PFDDINIDS LYKKILSGK YAEPPFLSA ESKRLIASM LQVDPKKRI TVQELLSHP WLTLGILDP VDYTSIDLR KYDKDCVDV MASYYNVNP ERMWRHLKK WKYDYHTAT YFLLLSRKK RGAVLRLVS LPGQLHLKM RLEETPRKE RPQLKPLVI TQGQQLGAK EGQTPYYDC IENIENCKP ARNDNLDSP NVFVEPEKP PSVRKPQKR VRSPTLGEE SSPVIYFIA LKT
- >TC003567 RA
atggtgcgt tacgctgaa ctgaaaggc ttgtatgag attgagaag acgataggc tgtggagga tttgctaaa gttaagctc gcaactcat gtagcaacc ggagaaaag gtcgcagtt aaaataatg aacaagacg ggacttggc gatgacttg ccaagggtc aaactggaa ctgaaggct ttaaagtcg ttctcacac caacacatt tgcaaactc taccaagtg attgagtcg gaaacgcac tttttcata gttattgag tactgctca ggtggcgaa ctgtttgac cacattgtc gaaaaaaac cgcttgagt gaatcggaa agccgcact tttttccgg caaattgtg tcaggggtg gcttatttg cacagtctg gggtatgca cacagggac cttaaacca gagaacgtc cttctcgat aaagaccag aacttgaag ctgattgat tttggctta tgtgcccgg cctgagggg ggcatgggg agccccctg tacacgtct tgcggctct ccaacctac gcggccccc gagctagtc ttggggaag aaatatctg gggcccgaa gtggacgtc tgggccatg ggggtcctg ctctatgct ctcctagtc ggggctttg ccctttgat gacataaac atcgatagc ttgtataaa aaaattctg agtggcaaa tacgcggag cctcctttc ctgtccgcg gaaagcaag cgcctcatc gcctccatg ctccaagtg gaccccaag aaacgcatc accgtgcaa gagctcctc tcacaccct tggctcacg ttgggtatc ctggaccca gtcgattac acctcaatt gatttgaga aagtacgac aaggattgt gtcgacgtt atggcatcg tattacaac gtaaacccg gaaagaatg tggcgccac ttgaaaaaa tggaaatat gattatcac accgctacg tattttttg ttgctttcg aggaaaaaa agaggggct gttttgaga ctggtgtca ttgccgggg caactacac ttgaaaatg cggttggag gagactccg cgtaaagaa aggccccag ttgaaaccc ttggtgata actcaagga cagcaatta ggtgcaaaa gagggacag acgccgtac tacgactgt atcgagaat atcgaaaat tgcaaaccg gcgagaaat gataatctg gatagtccc aatgtgttt gttgaacct gagaagccc ccaagcgta cgcaaacct cagaagagg gtgaggagc cccactttg ggagaggaa agttcgcca gtcatttac ttcattgct cttaaaact taa
- >TC003567 RA
cagatgtca aaacaattc gaattcaaa tgcggaaaa ttcgttaat gtttgcaaa tttctaaca aaaatatgt gtgtaattt gagcaaaaa atcgtgcaa ctgtccgtt tttgtgtga taaagtagt cggagaaca agtgtttgt caagtagtc aaaatggtg cgttacgct gaactgaaa ggcttgtat gagattgag aagacgata ggctgtgga ggatttgct aaagttaag ctcgcaact catgtagca accggagaa aaggtcgca gttaaaata atgaacaag acgggactt ggcgatgac ttgccaagg gtcaaactg gaactgaag gctttaaag tcgttctca caccaacac atttgcaaa ctctaccaa gtgattgag tcggaaacg cactttttc atagttatt gagtactgc tcaggtggc gaactgttt gaccacatt gtcgaaaaa aaccgcttg agtgaatcg gaaagccgc acttttttc cggcaaatt gtgtcaggg gtggcttat ttgcacagt ctggggtat gcacacagg gaccttaaa ccagagaac gtccttctc gataaagac cagaacttg aagctgatt gattttggc ttatgtgcc cggcctgag gggggcatg gggagcccc ctgtacacg tcttgcggc tctccaacc tacgcggcc cccgagcta gtcttgggg aagaaatat ctggggccc gaagtggac gtctgggcc atgggggtc ctgctctat gctctccta gtcggggct ttgcccttt gatgacata aacatcgat agcttgtat aaaaaaatt ctgagtggc aaatacgcg gagcctcct ttcctgtcc gcggaaagc aagcgcctc atcgcctcc atgctccaa gtggacccc aagaaacgc atcaccgtg caagagctc ctctcacac ccttggctc acgttgggt atcctggac ccagtcgat tacacctca attgatttg agaaagtac gacaaggat tgtgtcgac gttatggca tcgtattac aacgtaaac ccggaaaga atgtggcgc cacttgaaa aaatggaaa tatgattat cacaccgct acgtatttt ttgttgctt tcgaggaaa aaaagaggg gctgttttg agactggtg tcattgccg gggcaacta cacttgaaa atgcggttg gaggagact ccgcgtaaa gaaaggccc cagttgaaa cccttggtg ataactcaa ggacagcaa ttaggtgca aaagaggga cagacgccg tactacgac tgtatcgag aatatcgaa aattgcaaa ccggcgaga aatgataat ctggatagt cccaatgtg tttgttgaa cctgagaag cccccaagc gtacgcaaa cctcagaag agggtgagg agccccact ttgggagag gaaagttcg ccagtcatt tacttcatt gctcttaaa acttaaacg tttattaaa aaaatcaca tgtaa
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
