| General information | |||
| TC002993 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007418.3: 5158413..5161725 | |
| Sequence information | |||
| Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
||
| Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
| Closest fly homologs |
|
TC002993 | |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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| GO ID | * {{ blurIdResult }} |
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* : mandatory fields
Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
| General information | ||||
| iB_00495 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
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Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 88.89% (includes death as pupa, adult)
pupa eclosion not fulfilled (died as pupa) - Number of animals showing the phenotype: 3 (3 dpi)adult lethality immediately after eclosion - Number of animals showing the phenotype: 1 (3 dpi)
adult lethality - Number of animals showing the phenotype: 2 (9 dpi)
adult lethality - Number of animals showing the phenotype: 3 (11 dpi)
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 100.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)
- >TC002993 RA
MTNTNVDDL TSALQGTRV SPTGVTFAG QSLKLDTVD DAKSVIEEI EKCTNLQFL NLEGNTLGV EASKGIAKA LEKHPEFKR ALWKDMFTG RMKTEIPKA LEFLGSGLV TAGARLTEL DMSDNAFGP IGVEGLAAL LRSSSCYAL EELRLNNNG LGITGGKLL ASALTDCYN SSKETGKPL QLKVFIAGR NRLENEGAK ALAEVFKMI GTLEEIAMP QNGIYHVGI SALSEAFTQ NKNLQILNL NDNTIGEKG AEAIAKALP HLQQLKEIN FGDCLLKTA GAISLANVL KTGHANLEE LTLGHNEIR LKGGLQLVK AMANKSKLK VLNLNGNQF GEDGRKQIE TEIKQIGKL NSLGSLSGD ESEDSEEET SEEVSHTES DMEEEIIEP KTATDFLNS PTEEIFIAL GDARNELIL REAKKGDDI DVNTFIPVL MKVASLANS SKENVSKLA LSCSERLYK ELFTWSDKT NNSCLVNNT ILIHLGLIK AEDKKFKPT WNLDACAKA LRSVMDKNY VTEITKNTF TVFLQKDKS GSR
- >TC002993 RA
atgacaaat accaatgta gacgacctt acaagtgcc ttacaaggc actcgtgtg agccccact ggggtcacc tttgccggc cagtcttta aaacttgat actgttgat gacgcaaaa agcgtaatt gaagagata gaaaaatgc accaacctc caattttta aacttggaa ggcaatact ttgggagtt gaagcgtcc aaaggcatt gccaaagca ttggaaaaa catcccgag tttaagaga gcgctatgg aaggacatg tttacgggc agaatgaaa acagaaata ccgaaagct ttggaattt cttggtagt ggtttagta acggcaggt gcccgcttg actgaactg gacatgagt gacaatgct ttcggccca attggtgtc gaaggactt gctgctctt ttgagaagc tcctcatgc tatgcttta gaagaactc aggttaaat aataacggc ctaggcatc actggtggt aaattgtta gcgtcagcc ctaacagac tgctataac tctagtaaa gaaacggga aaaccactc cagctcaag gtttttatc gctggaaga aaccgactt gagaatgaa ggtgcaaaa gcacttgct gaggttttc aagatgatt ggtacactt gaagaaata gcaatgccc cagaatggt atttaccac gttggcata tcggcacta tctgaggct tttacccaa aataaaaat ctgcaaatt ttaaacttg aatgacaat acgattggt gaaaagggg gctgaggcc attgctaaa gccctccca cacttgcaa cagttgaaa gaaatcaat tttggcgac tgtttgctg aaaactgcc ggagctatt tctctagca aatgtttta aaaactggt catgccaac ttggaggag ttaacactt gggcacaac gaaattcgc ctgaaaggg gggcttcag ttggttaaa gccatggcg aataaaagt aaattgaaa gtgttaaat ttgaacgga aatcagttt ggggaagac ggtcgtaaa caaattgaa accgaaatt aaacaaata ggcaaatta aattccttg ggaagttta agcggggat gagtctgag gacagtgag gaggaaacc agtgaagaa gtgtcgcac actgagagt gacatggag gaggaaatc attgagcca aaaacagcc accgatttt ctgaattcg ccaactgag gaaattttt attgcactt ggtgatgcc agaaatgag ctgatttta agagaagct aaaaaaggt gacgatatt gatgtcaac acttttatt cccgtttta atgaaagtc gcgtctctt gccaacagc agcaaagaa aacgtctct aaattggcg ctttcttgc tcggaaagg ttgtacaaa gaactgttc acatggtct gacaaaacg aacaattct tgtctggtg aacaacaca attttgata catttaggc ttaataaag gctgaagat aaaaaattt aagccaacg tggaacttg gacgcttgt gccaaggcg ctgaggagc gttatggac aaaaattac gtcacggaa attaccaaa aataccttc actgtgttt ttacaaaaa gataaaagt ggaagccga tga
- >TC002993 RA
tgaatatct gaaccaact ttaaaaaat tccaacggc ttgacacgc gtgagcgat tgtaattta ttaaataat agttgtagt attgtgtaa ataataaaa atgacaaat accaatgta gacgacctt acaagtgcc ttacaaggc actcgtgtg agccccact ggggtcacc tttgccggc cagtcttta aaacttgat actgttgat gacgcaaaa agcgtaatt gaagagata gaaaaatgc accaacctc caattttta aacttggaa ggcaatact ttgggagtt gaagcgtcc aaaggcatt gccaaagca ttggaaaaa catcccgag tttaagaga gcgctatgg aaggacatg tttacgggc agaatgaaa acagaaata ccgaaagct ttggaattt cttggtagt ggtttagta acggcaggt gcccgcttg actgaactg gacatgagt gacaatgct ttcggccca attggtgtc gaaggactt gctgctctt ttgagaagc tcctcatgc tatgcttta gaagaactc aggttaaat aataacggc ctaggcatc actggtggt aaattgtta gcgtcagcc ctaacagac tgctataac tctagtaaa gaaacggga aaaccactc cagctcaag gtttttatc gctggaaga aaccgactt gagaatgaa ggtgcaaaa gcacttgct gaggttttc aagatgatt ggtacactt gaagaaata gcaatgccc cagaatggt atttaccac gttggcata tcggcacta tctgaggct tttacccaa aataaaaat ctgcaaatt ttaaacttg aatgacaat acgattggt gaaaagggg gctgaggcc attgctaaa gccctccca cacttgcaa cagttgaaa gaaatcaat tttggcgac tgtttgctg aaaactgcc ggagctatt tctctagca aatgtttta aaaactggt catgccaac ttggaggag ttaacactt gggcacaac gaaattcgc ctgaaaggg gggcttcag ttggttaaa gccatggcg aataaaagt aaattgaaa gtgttaaat ttgaacgga aatcagttt ggggaagac ggtcgtaaa caaattgaa accgaaatt aaacaaata ggcaaatta aattccttg ggaagttta agcggggat gagtctgag gacagtgag gaggaaacc agtgaagaa gtgtcgcac actgagagt gacatggag gaggaaatc attgagcca aaaacagcc accgatttt ctgaattcg ccaactgag gaaattttt attgcactt ggtgatgcc agaaatgag ctgatttta agagaagct aaaaaaggt gacgatatt gatgtcaac acttttatt cccgtttta atgaaagtc gcgtctctt gccaacagc agcaaagaa aacgtctct aaattggcg ctttcttgc tcggaaagg ttgtacaaa gaactgttc acatggtct gacaaaacg aacaattct tgtctggtg aacaacaca attttgata catttaggc ttaataaag gctgaagat aaaaaattt aagccaacg tggaacttg gacgcttgt gccaaggcg ctgaggagc gttatggac aaaaattac gtcacggaa attaccaaa aataccttc actgtgttt ttacaaaaa gataaaagt ggaagccga tgatcgtgc tttaatatt tttaactga attaaaaac tgccaaaaa tggatgtgt atctcatag tatagacaa caaataaac acatttccc aaattacaa aatttattt aatcattca aaacaatca gttctctaa aacaagact aaattattt tccactatg tgtaaactt tcattgagg agcggatgc gtttcctgc agatggggc actgcccac tgtagcgca tcagtctgg gggtacaat cgtcacaca aacataagt gtcgacaag gcaaaacta acacacatt tagagttat cctgacaga ctacacaat aaccctcgt ttttttcgt cttcattat ttgtactca gtggtttac attctatta cttgtctag aactatgtt ttaaagcaa tacgcgaca agaaacgta aagttgcca ctttcacat gattgtact tcagtctta aagcggtaa aaaacgaag acactatgt ttctgaaat aggagaata ggacagaat agaactggg aaaaaatgt acaagaaac ataacccga ctatcaaac ctatgagcg attctagcg gtacgtctg ttacaaagt ggtaacaac tgtaaattg agtttaaaa ttaacttat aaactagcg taacattgt tacaaatgc tgtctaaga tgtaaacac acaaacttt tcaagtaat tgtacgtca gaggcccca gagacagta cagattttg gtacaaaga ctatgataa accacactc cgtcaccaa acagtataa caacttgct tcataatga caaaaatgt gtttaactg cgctcacta ttgcgagta ttccattta taggagcag tgcaaactc cagaaagcc attttaaga caccagtta gttgttggc aatagttga gtttttcag ccagccatt caaaaacgt agaccacac tttctgtta gacaatgaa gacggtgga tcacatctt ggagaaata tggtaaagt cttccaaaa ttaccgtca acagacaaa atagcttgt ttatgaacg atccggccg tcgtcagaa gaaaagcca aacttgtga caataaatt gccccgttt tcacactga tgtaaaacg tgtacgtaa ttgccgcct ttaaagtgg tgataacgg ccaacattg tgcaaaaac ttttctcat cgtaacttt tccaaaaac ttgaaagtt cttggtttg taggttaga aatttgaat ttgatcaag ggttttgat tttgacaaa accaaagtc actaacgtg ggagcgtcg tgtacaagg gacgaataa aaagtttac taccgt
