Status
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Gene information
General information
TC030942
Former TC numbers

If one gene is splitted or genes are merged, the original TC numbers are listed. One listed former TC number indicates the previous gene has be splitted, serveral former TC number represents a merged gene.

TC002163,TC001999 		Gene

The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser.

NW_015450989.1: 133045..148046
Sequence information
Transcripts / Proteins (1) Get mRNA sequence
Get CDS sequence
Get protein sequence
Ortholog information (from OrthoDB)

The information about the homolog genes in Drosophila is provided by OrthoDB http://www.orthodb.org/. The homologs are sorted according to their similarity score. For an orthology statement additional analysis are required.
The data basis for the orthologs is OrthoDB v9 containing OGS3 for Tribolium castaneum and 2015_04 (r6.07) for Drosophila melanogaster.

Closest fly homologs
    		TC030942
    Gene ontology

    GO terms for Tribolium

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      Status: {{ goTerm.status }}
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    There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.


    GO terms for the homologous Drosophila genes

    Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.


    Gene
    {{ goGene }}
    The Tribolium gene the GO term is assigned to.
    GO ID *
    {{ blurIdResult }}
    The ID of the GO term you assign to the gene. Please enter only the ID of the GO term with proceeding 'GO:'. This information is mandatory.
    Evidence
    {{ blurEvidenceResult }}
    The evidence code describes with which method the function or location, expressed by the GO term, was show for this gene. Please refer to this page for a definition of the evidence code and a decision tree.
    Reference *
    {{ blurReferenceResult }}
    The reference where the function or location is described for the gene. Please enter a PubMed ID. This information is mandatory.
    Quotation
    If you paste here the relevant section of the reference it is for us a great help to review your annotation. The quotation may be also be displayed to the users of iBeetle-Base.
    Name
    You may enter your name. The contact information can help us to clarify any questions. If you agree, we may show your name on this page to honor your contribution.
    Email
    We will use your email address only for possible questions regarding this annotation. We will never show your address or give it away.
    Publish name
    If you have entered your name and agree by marking the checkbox. we might show your name on this page to honor your contribution.
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    * : mandatory fields
    For help on how to submit larger datasets or non experimental data please contact us.
    iBeetle screen iB_00338

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection

    Fertility
    egg chamber partially not present - Number of animals showing the phenotype: 3

    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 60.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)

    pupal molt not fulfilled (died as pupa) - Number of animals showing the phenotype: 3 (11 dpi)
    Days post injection

    pupal molt not fulfilled (died as pupa) - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection

    pupal molt delayed (still pupa) - Number of animals showing the phenotype: 2 (16 dpi)
    Days post injection

    pupal molt delayed (still larva) - Number of animals showing the phenotype: 1 (16 dpi)
    Days post injection

    pupal molt not fulfilled (died as L7 or prepupa) - Number of animals showing the phenotype: 1 (19 dpi)
    Days post injection

    Pupal morphology
    wings shortened - Number of animals showing the phenotype: 6

    iBeetle screen iB_00321

    Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.

    iB sequence
    Phenotype after pupal injection
    Usually 10 injected animals

    Pupal injection procedure

    Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.

    3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.

    9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.

    11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.

    Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.

    13 dpi: Egg productivity and Ovary analysis
    The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi). In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.

    14 dpi: Analysis of embryonic musculature and early embryonic development
    Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.

    15 dpi: Analysis of larval instar 1 cuticle
    Offspring of injected females were analysed and cuticle phenotypes were annotated.

    22 dpi: Stink gland analysis
    Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.

    Terms used in the pupal injection procedure

    larval pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    empty eggs
    Just empty shells are visible, no cuticle has been developed.
    strong defects
    L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
    strongly fragmented (cuticle crumbs)
    No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
    cuticle remnants (with unidentifiable segments)
    Segments or parts of appendages are recognizable, but identity is not clear.
    cuticle remnants (with some identifiable segments)
    At least one segment or appendage is clearly regonizable.
    number of eggs on slide
    affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
    For the embryonic muscle analysis the hatched as well as the not hatched were analysed.
    total number of affected eggs/embryos/larvae
    Summary of all different phenotypes/ phenotypic series which were annotated.
    inside-out
    The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    Please see the help page for more information
    Metamorphosis and survival

    Lethality 11 days after pupal injection: 60.0% (includes death as pupa, adult)

    eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
    Days post injection

    adult lethality - Number of animals showing the phenotype: 4 (11 dpi)
    Days post injection

    Fertility
    egg chamber number decreased - Number of animals showing the phenotype: 4

    Phenotype after larval injection
    Usually 10 injected animals

    Larval injection procedure

    Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.

    11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.

    16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.

    19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.

    22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.

    41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).

    Terms used in the larval injection procedure

    pupal/ adult pantagmatic defects
    At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
    pupal molt not fulfilled
    The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
    eclosion not fulfilled
    The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
    starved
    Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
    Metamorphosis and survival

    Lethalities 11 days after larval injection: 60.0% (includes death as larva, prepupa, pupa)
    Lethalities 22 days after larval injection: 100.0% (includes death as larva, prepupa, pupa, adult)

    larva lethality early (L5/6) - Number of animals showing the phenotype: 2 (11 dpi)
    Days post injection

    larva lethality late (L7) - Number of animals showing the phenotype: 3 (11 dpi)
    Days post injection

    pupation delayed (still larva) - Number of animals showing the phenotype: 4 (11 dpi)
    Days post injection

    remarks: animals lost, larva lethality late (L7) - Number of animals showing the phenotype: 4 (19 dpi)
    Days post injection

    Pupal morphology
    remarks: animals lost,
    RNAi sequence
    Primers
    Left: Right:
    Protein sequence
    • >TC030942 RA
      MEQVAALKD KGNAALAAN KFEEAIKHY TEAIKLDPS 
NHVLYSNRS AAFAKANNH ESALEDANK TVELKPDWA 
KGYSRKGAA LAYLGRLDE AIATYERGL QIEPANPQL 
QEGLQEVKA QKTAKGFPN PFNRPDLME KLRGDPRTK 
PLLDDPNYV ATLHMLKTN PNLLGQKLQ DPNILTTLS 
VLIGIDPGE EPMETEPVY TPPKKPEPK KEPEPDLPE 
NKKLAKAAK EQGNEFYKK KNFEKAIEF YNQAIEHDP 
TDITFYNNL AAVFFEQKD YDRCIKECE RAIDIGREN 
RADFKLIAK SFLRIGNAY KRLKDYQNA KIYYEKSMS 
EHRTPEIKT LLSDVEKII KEEERKAYV NPELAEKEK 
EIGNELFKK GDYATAVKH YTEAIKRNP EDAKLYSNR 
AACYTKLAA FDLGLKDCD KCVELDPKF IKGWIRKAH 
ILQGMQQPT KAMSAFQKA LEIDPNNAE AINGYRACS 
IENASGSGD PEKIRQRAM ADPEVQSIL RDPAMRMIL 
EQMQNDPRA LQDHLKNPD IAAKIQKLL ESGLIAIH
    CDS sequence
    • >TC030942 RA
      atggaacaa gtcgccgct ttgaaagac aaaggcaat 
gccgcactg gccgccaac aagttcgaa gaggcaatc 
aaacactac accgaagcc atcaaactc gacccctcg 
aaccacgtc ctgtactcc aaccgttcc gccgccttc 
gccaaagcc aacaaccac gaatcggct ctcgaagac 
gccaacaaa acggtcgaa ctgaagccc gactgggcc 
aagggctac tcacggaag ggggctgcc ttggcatac 
ctggggcgc ctcgacgag gccatcgcc acgtacgag 
cgcggcttg cagatcgag cccgccaac ccccagctc 
caggagggg ctgcaggag gtcaaagcc cagaaaaca 
gccaagggg ttccccaat cctttcaac cgacctgac 
ctcatggag aagcttcgc ggggacccc cggaccaag 
cccctgctc gatgacccc aactacgtc gcgacgctc 
cacatgctc aaaacaaac cccaatctc ctcggccag 
aaactacaa gaccccaat attttgacc acgttgagt 
gtcttgatt ggaatcgat ccgggggaa gaaccgatg 
gagaccgaa ccggtgtac acgccaccg aagaagccc 
gaaccgaag aaagaaccc gagccggac ttacccgag 
aacaagaaa ctggcgaaa gcggcgaag gaacaaggg 
aatgaattt tacaaaaag aagaatttt gaaaaagcg 
atcgagttt tataatcag gcgattgaa cacgatccc 
accgatatc acgttttat aataatttg gcggcggtt 
tttttcgaa cagaaggat tacgatcga tgtattaag 
gagtgcgag agggctatt gatataggg agggagaat 
agagccgat tttaaatta attgcaaag tcgtttctt 
aggattggg aatgcgtat aagagactg aaggattat 
caaaatgcg aaaatttat tacgaaaag tcaatgtcc 
gaacatagg acgcctgaa attaaaacg ctgttgtcc 
gatgttgag aagattatc aaagaggag gaacggaaa 
gcttatgtt aatcccgaa ttagctgaa aaagagaag 
gaaattggt aatgaatta tttaagaaa ggtgattac 
gccactgcc gtcaaacac tacaccgaa gccatcaaa 
cgcaaccca gaagacgcc aaactgtac agtaaccgt 
gctgcctgt tatacaaaa ctagctgcc tttgatctt 
ggtttaaaa gactgcgac aagtgcgtt gagctcgat 
ccgaaattc atcaaaggg tggatccga aaagcacac 
attttgcaa ggaatgcaa caaccgacc aaagccatg 
tcagctttc caaaaagcg ctcgaaatc gatccgaat 
aatgccgaa gctattaac ggatataga gcatgcagt 
atagaaaat gcgagcggt tcaggtgat cctgaaaag 
ataagacaa cgtgcgatg gctgatcct gaagttcag 
tcgattttg agagatccc gcaatgagg atgatcttg 
gaacagatg caaaatgat ccaagagct ttgcaagac 
cacttaaag aatcctgat atagctgca aagatacaa 
aagttgcta gagtcgggg cttattgct attcattaa
    mRNA sequence
    • >TC030942 RA
      gtgtttttg tgattatta agtgccggt caaaatgga 
acaagtcgc cgctttgaa agacaaagg caatgccgc 
actggccgc caacaagtt cgaagaggc aatcaaaca 
ctacaccga agccatcaa actcgaccc ctcgaacca 
cgtcctgta ctccaaccg ttccgccgc cttcgccaa 
agccaacaa ccacgaatc ggctctcga agacgccaa 
caaaacggt cgaactgaa gcccgactg ggccaaggg 
ctactcacg gaagggggc tgccttggc atacctggg 
gcgcctcga cgaggccat cgccacgta cgagcgcgg 
cttgcagat cgagcccgc caaccccca gctccagga 
ggggctgca ggaggtcaa agcccagaa aacagccaa 
ggggttccc caatccttt caaccgacc tgacctcat 
ggagaagct tcgcgggga cccccggac caagcccct 
gctcgatga ccccaacta cgtcgcgac gctccacat 
gctcaaaac aaaccccaa tctcctcgg ccagaaact 
acaagaccc caatatttt gaccacgtt gagtgtctt 
gattggaat cgatccggg ggaagaacc gatggagac 
cgaaccggt gtacacgcc accgaagaa gcccgaacc 
gaagaaaga acccgagcc ggacttacc cgagaacaa 
gaaactggc gaaagcggc gaaggaaca agggaatga 
attttacaa aaagaagaa ttttgaaaa agcgatcga 
gttttataa tcaggcgat tgaacacga tcccaccga 
tatcacgtt ttataataa tttggcggc ggttttttt 
cgaacagaa ggattacga tcgatgtat taaggagtg 
cgagagggc tattgatat agggaggga gaatagagc 
cgattttaa attaattgc aaagtcgtt tcttaggat 
tgggaatgc gtataagag actgaagga ttatcaaaa 
tgcgaaaat ttattacga aaagtcaat gtccgaaca 
taggacgcc tgaaattaa aacgctgtt gtccgatgt 
tgagaagat tatcaaaga ggaggaacg gaaagctta 
tgttaatcc cgaattagc tgaaaaaga gaaggaaat 
tggtaatga attatttaa gaaaggtga ttacgccac 
tgccgtcaa acactacac cgaagccat caaacgcaa 
cccagaaga cgccaaact gtacagtaa ccgtgctgc 
ctgttatac aaaactagc tgcctttga tcttggttt 
aaaagactg cgacaagtg cgttgagct cgatccgaa 
attcatcaa agggtggat ccgaaaagc acacatttt 
gcaaggaat gcaacaacc gaccaaagc catgtcagc 
tttccaaaa agcgctcga aatcgatcc gaataatgc 
cgaagctat taacggata tagagcatg cagtataga 
aaatgcgag cggttcagg tgatcctga aaagataag 
acaacgtgc gatggctga tcctgaagt tcagtcgat 
tttgagaga tcccgcaat gaggatgat cttggaaca 
gatgcaaaa tgatccaag agctttgca agaccactt 
aaagaatcc tgatatagc tgcaaagat acaaaagtt 
gctagagtc ggggcttat tgctattca ttaattttt 
ggtttagtg atgaggaac gtgcgatta tgtttgtgt 
tgaatagcg atcgaagcg catttagag tggttgcag 
tatccagcg tttgatctt tttacttag cttaataac 
cgtttaagt aataaattt acgttttta aagcacatt 
tctatttat ttacttacc aacaagtct gaccacagt 
gccctctac ttattgatt ataacttat aagtattgt 
attcatttc ttttgtaat cattaaatt acgcttcaa 
ata
    The data is licensed under a Creative Commons Attribution 3.0 Unported License. (CC-BY) CC-BY