General information | |||
TC001885 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007416.3: 489352..491825 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs |
|
TC001885 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_00308 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 30.0% (includes death as pupa, adult)
adult lethality - Number of animals showing the phenotype: 3 (9 dpi)larval musculature irregular - Penetrance (percentage of animals/eggs on slide): 30% - 50%
affected eggs/embryos/larvae - Penetrance (percentage of animals/eggs on slide): 50% - 80%
remarks: muscle pattern potentially obscured by segmentation defect,
remarks - cuticles: eggs lost,
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 10.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 10.0% (includes death as larva, prepupa, pupa, adult)
pupal molt delayed (still larva) - Number of animals showing the phenotype: 1 (11 dpi)
adult lethality immediately after eclosion - Number of animals showing the phenotype: 1 (16 dpi)
- >TC001885 RA
MWDSISTDS CDVCQCPPR SKRGDDSCL DKENIQQAL SPVKIEELS FYGNSSPPA IICSGTSPN HCNHNIITR RPLEDHDPN SRDSGYVAN YNEGKFSTY ASPTRGSFE LASIGSMED EFFEDFSDI EPLEDNLPQ DFGKLITGP INFQNRKET PTSPRDLVI RPLFRRALS LQTERTPPS RVRSCLFKT TESRPFKRP EPPQGFESP NSKKQKIED EEAAVPVAR PVLQRCVSA TEESIKFAV QRSFVEPDL IGDFSKTFC LPLTQGRHQ DLKCITADT LAKLIRGDF SGNVASYKV IDCRYPYEY KGGHIDGAI NVYTKEQCM ELLTNVASA SKEPRKRSN ILVFHCEFS SKRGPDLYR YLREQDRQL NQDVYPSLH YPEVYLLEG GYKKFFEEY SDLCVPIAY TEMLHPEYE NELRHFRLK SKTWNADTR QRSGCRHNL KRLGL
- >TC001885 RA
atgtgggat tcgataagc acggattct tgtgatgtc tgccagtgc cccccaaga tcgaaacga ggggacgat tcttgtttg gataaagaa aatattcag caagcgtta agtccggtc aaaatagaa gagttatcg ttttacgga aattcgagt cctccggca ataatctgc tccgggact tcaccgaat cactgcaac cacaatata ataactcgg cgccccctt gaggaccac gaccccaat tcgcgcgat tccggttac gttgctaat tacaatgag ggtaaattc tcgacttat gcttccccg actcggggg tcgttcgaa ctggcctcg atcgggtcc atggaggac gagtttttc gaggatttt tccgatatt gagcccttg gaggacaac ttgccgcag gatttcggg aaattgatc actggaccg atcaatttc cagaaccgg aaagagaca ccgacttcg ccgagggat ctagtaatt cggccctta tttcgaagg gctttgtcc ttgcaaact gaaaggacg ccgccaagc agggtcagg tcttgcctc ttcaaaaca acagaatct cgcccgttt aagagacca gaaccgccg caaggattc gaaagccca aattcgaaa aaacagaaa attgaggat gaggaagcc gctgttcca gtcgcaagg cctgtgctt cagagatgc gtgtctgcg acggaggag agtataaag tttgcggtc cagaggtca ttcgtggag ccagacctc atcggtgac ttcagcaag acgttttgt ttgccctta acgcaaggc cgtcatcag gacttgaag tgcatcact gctgacact ttggccaaa ctaatccgt ggtgacttt agcggaaac gtcgcctct tacaaagtt atcgattgc cggtaccct tacgagtac aagggtggc catattgac ggcgccatt aacgtctac accaaggag cagtgcatg gaactatta actaacgtc gcctctgcg agcaaggag ccgcgcaaa aggagcaat atcctggtt ttccattgc gagttttcg agcaagcgg ggtccagat ttatatcgg tatttgcgt gagcaggac cgccagctc aaccaggac gtctaccct tcgttgcac taccccgaa gtctaccta cttgagggt ggctataag aagttcttc gaggaatat tccgacctc tgcgttcct atagcctac acggagatg ctgcacccg gaatatgag aatgagttg cgacatttc cggctcaaa tccaaaacc tggaatgct gatacgcgt caacggtcc gggtgccgt cacaatttg aaaagacta ggactgtaa
- >TC001885 RA
aggataaag actgaggta ggctacctt cacttccaa gtcgcgttt gtgtggtgt gcgaggacg tatcgtcct ggtttgagt gcttgttgc ttgtgttag attttaaga cgttttaag gatatttca ccgctttct tccgacaat gtgggattc gataagcac ggattcttg tgatgtctg ccagtgccc cccaagatc gaaacgagg ggacgattc ttgtttgga taaagaaaa tattcagca agcgttaag tccggtcaa aatagaaga gttatcgtt ttacggaaa ttcgagtcc tccggcaat aatctgctc cgggacttc accgaatca ctgcaacca caatataat aactcggcg cccccttga ggaccacga ccccaattc gcgcgattc cggttacgt tgctaatta caatgaggg taaattctc gacttatgc ttccccgac tcgggggtc gttcgaact ggcctcgat cgggtccat ggaggacga gtttttcga ggatttttc cgatattga gcccttgga ggacaactt gccgcagga tttcgggaa attgatcac tggaccgat caatttcca gaaccggaa agagacacc gacttcgcc gagggatct agtaattcg gcccttatt tcgaagggc tttgtcctt gcaaactga aaggacgcc gccaagcag ggtcaggtc ttgcctctt caaaacaac agaatctcg cccgtttaa gagaccaga accgccgca aggattcga aagcccaaa ttcgaaaaa acagaaaat tgaggatga ggaagccgc tgttccagt cgcaaggcc tgtgcttca gagatgcgt gtctgcgac ggaggagag tataaagtt tgcggtcca gaggtcatt cgtggagcc agacctcat cggtgactt cagcaagac gttttgttt gcccttaac gcaaggccg tcatcagga cttgaagtg catcactgc tgacacttt ggccaaact aatccgtgg tgactttag cggaaacgt cgcctctta caaagttat cgattgccg gtaccctta cgagtacaa gggtggcca tattgacgg cgccattaa cgtctacac caaggagca gtgcatgga actattaac taacgtcgc ctctgcgag caaggagcc gcgcaaaag gagcaatat cctggtttt ccattgcga gttttcgag caagcgggg tccagattt atatcggta tttgcgtga gcaggaccg ccagctcaa ccaggacgt ctacccttc gttgcacta ccccgaagt ctacctact tgagggtgg ctataagaa gttcttcga ggaatattc cgacctctg cgttcctat agcctacac ggagatgct gcacccgga atatgagaa tgagttgcg acatttccg gctcaaatc caaaacctg gaatgctga tacgcgtca acggtccgg gtgccgtca caatttgaa aagactagg actgtaaat atcgaatcc cagtgccaa aatttgtga gatagtaca aaatacaag tgcgcggac ttgtttgcc aaatgatat gtacaaagt aatgtgcta tattagcat gtatcctga agacttagt cttcttagt gtatattac aactgtata taagagagt acctaaata gcttgctcc agagtagtt gagatgaga tctttcctt ttgcaatgc taaaccacc aaagttttc tttttgtta tttagacag tcgacggat catcctggt cccccttta atttatttt ttatgtgca atttgaaca gcaataacg atgtgatgt tgcatttct ttaccagta cattatgct tccttgctg ttgcgctgg tgtttgttt gcagatttt ttatgttca ttttattag tttagtata gtctaagtg tcagtattg tttttgtat ccttcagca tattcaaat gtgttcgaa tgcaacggc tggggattt tatactact tgaatgtga tttgttcac tatttggac ggactgatg cttacccat ccgttgcat catagattt ttaaagtga tacttaata ttatagatc tgtacaata ttttaatat ttttataac ttatgataa tacattttt gttccacat
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
