General information | |||
TC000444 | Gene
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
NC_007417.3: 11195922..11198090 | |
Sequence information | |||
Transcripts / Proteins (1) | Get mRNA sequence
Get CDS sequence Get protein sequence |
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Ortholog information (from OrthoDB)
The information about the homolog genes in Drosophila
is provided by OrthoDB http://www.orthodb.org/.
The homologs are sorted according to their similarity score. For an orthology statement additional
analysis are required. | |||
Closest fly homologs | TC000444 |
GO terms for Tribolium
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There are no GO terms for Tribolium at the moment. You can help the community by providing some GO terms for this gene.
GO terms for the homologous Drosophila genes
Assign a GO term to this Tribolium gene by filling in the fields. Repeat to add several GO terms. Search AmiGO for the correct GO ID. Use only the most specific term - use "graph views" to browse related terms ("child terms" are more specific; the more general "parent" terms will be automatically linked). Only information based on Tribolium data should be entered - do not define terms just based on Drosophila knowledge. We will review this information and submit the annotation to the Gene Ontology consortium.
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Attention! iBeetle is a first pass screen. Hence, the documented phenotypes need to be confirmed by independent experiments using non-overlapping dsRNA fragments! Phenotypes with a penetrance > 50% are frequently reproduced. See Schmitt-Engel et al. 2015 for details on reproducibility.
General information | ||||
iB_00095 | iB fragment
The sequence from the iB fragment is matched against the genes from the official gene set. The matche(s) is/are visualizied in a genome browser. |
Get FastA Get primers |
Pupal injection procedure
Day 0: 10 female pupae of the pBA19 strain (muscle enhancer trap line) were injected with dsRNA.
3 days post injection (dpi): Hatch control: Pupal and adult lethality as well as metamorphosis defects (molting, eclosion) were documented. For mating, 4 males of the black strain were added.
9 dpi: First egg-lay was collected and incubated for cuticle analysis. Adult lethality and egg production (reduced/ no egg-lay) was documented.
11 dpi: Second egg-lay was collected and incubated for embryonic muscle analysis. Adult lethality and egg production (reduced/ no egg-lay) were documented.
Note: The adult morphology was not analyzed systematically at 3/9/11 dpi. Only obvious phenotypes, visible without magnification, have been annotated.
13 dpi: Egg productivity and Ovary analysis
The percentage of hatched larvae was documented and not hatched larvae/ eggs were embedded for cuticle analysis (15 dpi).
In case of a reduction of egg production, 4 injected females were dissected to analyze the gross morphology of the ovaries.
14 dpi: Analysis of embryonic musculature and early embryonic development
Offspring of the injected females (hatched and not hatched larvae/ eggs) were analysed for embryonic lethality and muscle defects.
15 dpi: Analysis of larval instar 1 cuticle
Offspring of injected females were analysed and cuticle phenotypes were annotated.
22 dpi: Stink gland analysis
Documentation of defects in abdominal and thoracic stink glands (colour, size, content) of the injected femals.
Terms used in the pupal injection procedure
- larval pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- empty eggs
- Just empty shells are visible, no cuticle has been developed.
- strong defects
- L1 cuticle larvae which show severe defects. These strong defects are subdivided into three categories
- strongly fragmented (cuticle crumbs)
- No segments or appendages are identifiable, only residues of cuticle and bristles can be identified.
- cuticle remnants (with unidentifiable segments)
- Segments or parts of appendages are recognizable, but identity is not clear.
- cuticle remnants (with some identifiable segments)
- At least one segment or appendage is clearly regonizable.
- number of eggs on slide
- affected embryos usually (not always) do not hatch. Only the not hatched were used for cuticle analysis.
For the embryonic muscle analysis the hatched as well as the not hatched were analysed. - total number of affected eggs/embryos/larvae
- Summary of all different phenotypes/ phenotypic series which were annotated.
- inside-out
- The L1 larva shows a partial or complete inversion., e.g. bristles, appendages or parts of the abdominal segments are inverted into the interior of the cuticle.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
Lethality 11 days after pupal injection: 20.0% (includes death as pupa, adult)
eclosion not fulfilled (with pupal and adult features) - Number of animals showing the phenotype: 1 (3 dpi)adult lethality - Number of animals showing the phenotype: 1 (9 dpi)
thorax complete everted (inside-out) - Penetrance (percentage of animals/eggs on slide): less than 30%
thorax everted (inside-out) - Penetrance (percentage of animals/eggs on slide): less than 30%
abdomen everted (inside-out) - Penetrance (percentage of animals/eggs on slide): 50% - 80%
abdomen dorsal irregular - Penetrance (percentage of animals/eggs on slide): more than 80%
abdomen everted (inside-out) - Penetrance (percentage of animals/eggs on slide): less than 30%
affected eggs/embryos/larvae total percentage of affected eggs/embryos/larvae on slide - Penetrance (percentage of animals/eggs on slide): more than 80%
Larval injection procedure
Day 0: 10 female L5-6 larvae of the D17Xhom strain (females express RFP in the eyes and in the CNS; pupae express GFP in the thorax) were injected with dsRNA.
11 days post injection (dpi): Pupal morphology Documentation of larval/ pupal death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of pupal head and appendages, pupal thorax, pupal thoracic musculature, pupal legs, pupal wings, pupal abdomen and pupal genital lobes.
16 dpi: Adult morphology Documentation of larval/ pupal and adult death and defects of metamorphosis (eclosion, delayed development). Screening for alterations of adult head and appendages, adult thorax, adult elytra and hindwings, adult legs and cuticle properties. For mating 4 males of the black strain were added.
19 dpi: Sieving and egg-lay Documentation of adult lethality and enduring metamorphosis defects.
22 dpi: Ovary analysis (Fertility) In case of a reduction of egg production 4 females were dissected and the gross morphology of the ovaries were analysed.
41 dpi: Fertility and stink gland analysis Documentation of defects in abdominal and thoracic stink glands development (colour, size, content) of the injected females. Check for fertility of injected larvae (no or decreased offspring).
Terms used in the larval injection procedure
- pupal/ adult pantagmatic defects
- At least two tagmata (head, thorax, abdomen or terminus) show similar/ comparable defects.
- pupal molt not fulfilled
- The hatching from the larva to the pupa is interrupted. Either it dies as prepupa or the phenotype shows larval as well as pupal features.
- eclosion not fulfilled
- The emergence of the adult from the pupa stage is interrupted. This phenotype shows pupal as well as adult features.
- starved
- Dissected females show a strong resorption of fatbody predominately in the abdomen and the oogenesis is blocked. These are considered as eventually lethal phenotypes and the blocked oogenesis probably a secondary defect due to starvation.
Lethalities 11 days after larval injection: 10.0% (includes death as larva, prepupa, pupa)
Lethalities 22 days after larval injection: 10.0% (includes death as larva, prepupa, pupa, adult)
- >TC000444 RA
MDVQIILEG PPFPPNYHM KQSLGQFFF DSASKFKDR ICQIDAKTE KSETFLTVK QKSVRVALE MQKRGITSK DVIVTCSAL TLETPVPIL ASFYLGAKV ANSDPTLSV AQTAHMLSL VSPTMIFVQ ESSLTLIEE SLQQAKLQA QIVVFGTCD KYPTFSDFN QAKENEEMF YPASVDIHD TGLMFFSSG TTGLPKAIC HSHFSFLNL AYCFCESGL KVDTTLSYT TFYWISGLM MLTSSFLKG GQRIVCTKV PEAKDVFEI IQKYKVTCL FLAPVLTYP LTDYANSGN FDTSSLHSI LTGGTPISE QQMTKLYAT FKHTCIVFA YGMTEVGMV GMFNPVTDK VLMTKKLTS SGKVAMGVS LKLVDVETN KTLGPNQKG EFLVKSPCM MKGYYKADC SDIFDEDGF LKTGDVGYY DQDGCLYIV ERRKEMFKY LSWHIVPSA IENVLLEHP EIKEAAVFG MPINEEMGD APAACVVLQ NGSKVTVQE IADFVASKV SDREKLRGG VFIVQELPR TPSGKLKRR DVKNYVLSL NRGTNKQ
- >TC000444 RA
atggatgta caaataata ttagaaggt cccccattt ccacccaat tatcacatg aaacaaagt ttgggtcaa tttttcttt gattccgcc tcaaaattc aaagaccga atatgccag atcgacgcc aaaaccgaa aaaagtgaa acgttctta acagttaaa caaaaaagt gttcgagtc gctttggag atgcagaaa cgaggaata acatcaaag gatgtgatt gttacttgc tctgcgcta actttagag accccagtc cccatcctt gcttctttt tacctcggt gctaaagtg gcaaactca gacccgact ttatcagtc gcacaaacg gctcacatg ctatcactt gtatcccca acaatgatt ttcgtccaa gaaagctca ctcactctg attgaagaa agcttgcaa caagccaag cttcaagca cagattgtg gtttttggg acgtgtgac aagtatcca acattttcc gatttcaac caagcgaag gaaaacgaa gagatgttt tatccagcc tctgtcgat attcacgac actggtctg atgttcttc agcagcggc acaacaggg cttcccaaa gcgatctgt cacagtcat ttcagtttc ttaaacctt gcttactgt ttttgtgaa tcggggctt aaggttgac acgactctt tcttacact actttttac tggatatcg gggcttatg atgttgact tcttcgttt ttaaaaggc ggacagcga attgtttgc accaaggtg cccgaagcc aaagacgtt tttgaaatt attcaaaaa tataaagta acttgtctg tttttggct ccggtttta acataccca ctcacagat tacgcaaac agcggcaat tttgatact tcttcgctg cattctatt cttaccggt ggtacccca ataagcgaa caacaaatg accaaactt tacgccact tttaagcac acttgcatt gtatttgcg tacggtatg acggaagtt ggcatggtt ggaatgttt aatccagta actgataaa gttctaatg actaagaaa ttaacttct tctggaaaa gtggcaatg ggggtctca ctgaagcta gtggatgtt gaaaccaat aaaaccttg ggcccgaac cagaaaggc gaatttctg gttaaatcc ccttgcatg atgaagggc tattacaaa gccgattgt tccgacatt ttcgacgaa gacggtttc ctaaagacg ggagatgtt ggttattac gaccaagac gggtgtctt tacattgta gaaagacgc aaagaaatg tttaaatat ctgtcctgg cacattgtt ccatcggct atcgaaaat gttttgctt gaacatccc gaaataaaa gaggctgca gttttcgga atgccgata aatgaagaa atgggggac gcacctgcg gcttgtgtg gtcttgcaa aatgggagt aaagtcact gtgcaagaa attgcagat tttgtcgct agcaaggtt tcagacagg gagaaatta agaggaggt gtcttcata gtgcaagaa ctgcccagg acaccgagt ggcaaattg aaaaggcga gacgttaaa aattacgtt ttaagttta aatagggga acaaataaa caataa
- >TC000444 RA
aaactacat caaacatgg atgtacaaa taatattag aaggtcccc catttccac ccaattatc acatgaaac aaagtttgg gtcaatttt tctttgatt ccgcctcaa aattcaaag accgaatat gccagatcg acgccaaaa ccgaaaaaa gtgaaacgt tcttaacag ttaaacaaa aaagtgttc gagtcgctt tggagatgc agaaacgag gaataacat caaaggatg tgattgtta cttgctctg cgctaactt tagagaccc cagtcccca tccttgctt ctttttacc tcggtgcta aagtggcaa actcagacc cgactttat cagtcgcac aaacggctc acatgctat cacttgtat ccccaacaa tgattttcg tccaagaaa gctcactca ctctgattg aagaaagct tgcaacaag ccaagcttc aagcacaga ttgtggttt ttgggacgt gtgacaagt atccaacat tttccgatt tcaaccaag cgaaggaaa acgaagaga tgttttatc cagcctctg tcgatattc acgacactg gtctgatgt tcttcagca gcggcacaa cagggcttc ccaaagcga tctgtcaca gtcatttca gtttcttaa accttgctt actgttttt gtgaatcgg ggcttaagg ttgacacga ctctttctt acactactt tttactgga tatcggggc ttatgatgt tgacttctt cgtttttaa aaggcggac agcgaattg tttgcacca aggtgcccg aagccaaag acgtttttg aaattattc aaaaatata aagtaactt gtctgtttt tggctccgg ttttaacat acccactca cagattacg caaacagcg gcaattttg atacttctt cgctgcatt ctattctta ccggtggta ccccaataa gcgaacaac aaatgacca aactttacg ccactttta agcacactt gcattgtat ttgcgtacg gtatgacgg aagttggca tggttggaa tgtttaatc cagtaactg ataaagttc taatgacta agaaattaa cttcttctg gaaaagtgg caatggggg tctcactga agctagtgg atgttgaaa ccaataaaa ccttgggcc cgaaccaga aaggcgaat ttctggtta aatcccctt gcatgatga agggctatt acaaagccg attgttccg acattttcg acgaagacg gtttcctaa agacgggag atgttggtt attacgacc aagacgggt gtctttaca ttgtagaaa gacgcaaag aaatgttta aatatctgt cctggcaca ttgttccat cggctatcg aaaatgttt tgcttgaac atcccgaaa taaaagagg ctgcagttt tcggaatgc cgataaatg aagaaatgg gggacgcac ctgcggctt gtgtggtct tgcaaaatg ggagtaaag tcactgtgc aagaaattg cagattttg tcgctagca aggtttcag acagggaga aattaagag gaggtgtct tcatagtgc aagaactgc ccaggacac cgagtggca aattgaaaa ggcgagacg ttaaaaatt acgttttaa gtttaaata ggggaacaa ataaacaat aatacttca gaagtttgt gtttcttta tcataaaaa ctaacatgt tttgccagg taattgaat actgatgtt ttatgaaaa aataagtga tcttgtcgc tgattattg attctcgtt caatatttt tatcactgt caacacgtt tatcggagt atgagacaa gcaattaaa tttataaaa tatgtctta ttaattttt attaaaatt tgatgaagc acaacagcc gttcataaa ttttcctca attaaatcc agaatggtt ggaattatt aattttttc ctaattcaa ttagcaaca cccgccgta ctatttgtg gaatcatgt caattggta ataaatatc ttattgtta a
If you use iBeetle-Base, please cite: Dönitz J et al.: Expanded and updated data and a query pipeline for iBeetle-Base,
Nucleic Acids Res. 2018 Jan 4;46(D1):D831-D835. doi: 10.1093/nar/gkx984.
